Comparative analysis of codon usage patterns in chloroplast genomes of five Miscanthus species and related species

J Sheng, X She, X Liu, J Wang, Z Hu - PeerJ, 2021 - peerj.com
Miscanthus is not only a perennial fiber biomass crop, but also valuable breeding resource
for its low-nutrient requirements, photosynthetic efficiency and strong adaptability to …

Analysis of codon usage bias and evolution in the chloroplast genome of Mesona chinensis Benth

D Tang, F Wei, Z Cai, Y Wei, A Khan, J Miao… - Development Genes and …, 2021 - Springer
Mesona chinensis Benth (MCB) is one of the main economic crops in tropical and
subtropical areas. To understand the codon usage bias (CUB) in M. chinensis Benth …

Codon usage by chloroplast gene is bias in Hemiptelea davidii

H Liu, Y Lu, B Lan, J Xu - Journal of Genetics, 2020 - Springer
The base composition of the chloroplast genes is of great interest because they play a highly
significant role in the evolutionary development of the plants. Evaluation of the 48 …

Comparative analysis of codon usage patterns in chloroplast genomes of six Euphorbiaceae species

Z Wang, B Xu, B Li, Q Zhou, G Wang, X Jiang, C Wang… - PeerJ, 2020 - peerj.com
Euphorbiaceae plants are important as suppliers of biodiesel. In the current study, the codon
usage patterns and sources of variance in chloroplast genome sequences of six different …

Comparative analysis of codon usage patterns in chloroplast genomes of the Asteraceae family

X Nie, P Deng, K Feng, P Liu, X Du, FM You… - Plant molecular biology …, 2014 - Springer
Codon usage bias (CUB) is an important evolutionary feature in a genome and has been
widely documented from prokaryotes to eukaryotes. However, the significance of CUB in the …

Comparative Analysis on the Codon Usage Pattern of the Chloroplast Genomes in Malus Species

G Li, L Zhang, P Xue, M Zhu - Biochemical Genetics, 2023 - Springer
Codon usage bias of coding sequences has been usually used for exploring the
evolutionary factors that affect the variation of genes. We took 20 chloroplast genomes of …

Comparative analysis of codon bias in the chloroplast genomes of theaceae species

Z Wang, Q Cai, Y Wang, M Li, C Wang, Z Wang… - Frontiers in …, 2022 - frontiersin.org
Theaceae species are dicotyledonous angiosperms with extremely high ornamental and
economic value. The chloroplast genome is traditionally used to study species evolution …

Analysis of codon usage patterns of the chloroplast genomes in the Poaceae family

Y Zhang, X Nie, X Jia, C Zhao, SS Biradar… - Australian Journal of …, 2012 - CSIRO Publishing
Codon usage patterns of 23 Poaceae chloroplast genomes were analysed in this study.
Neutrality analysis indicated that the codon usage patterns have significant correlations with …

Comparative analysis of codon usage patterns in chloroplast genomes of ten Epimedium species

Y Wang, D Jiang, K Guo, L Zhao, F Meng, J Xiao… - BMC genomic data, 2023 - Springer
Abstract Background The Phenomenon of codon usage bias exists in the genomes of
prokaryotes and eukaryotes. The codon usage pattern is affected by environmental factors …

Analysis of codon usage bias of chloroplast genomes in Gynostemma species

P Zhang, W Xu, X Lu, L Wang - Physiology and Molecular Biology of Plants, 2021 - Springer
Gynostemma plants are important Chinese medicinal material and economic crops. Codon
usage analysis is a good way to understand organism evolution and phylogeny. There is no …