Periodic perturbation of genetic oscillations

VP Zhdanov - Chaos, Solitons & Fractals, 2012 - Elsevier
Kinetics of gene expression may be oscillatory due to the feedbacks between the mRNA,
non-coding RNA and protein synthesis. In complex genetic networks, the kinetic oscillations …

Periodic perturbation of the bistable kinetics of gene expression

VP Zhdanov - Physica A: Statistical Mechanics and its Applications, 2011 - Elsevier
Kinetics of gene expression may be bistable or oscillatory due to the feedbacks between the
RNA and protein synthesis. In complex genetic networks, kinetic oscillations may influence …

Fluctuations of mRNA distributions in multiple pathway activated transcription.

G Lin, J Yu, Z Zhou, Q Sun… - Discrete & Continuous …, 2019 - search.ebscohost.com
Randomness in gene transcription can result in fluctuations (noise) of messenger RNA
(mRNA) levels, leading to phenotypic plasticity in the isogenic populations of cells. Recent …

Formulas for intrinsic noise evaluation in oscillatory genetic networks

Y Ito, K Uchida - Journal of theoretical biology, 2010 - Elsevier
The linear noise approximation is a useful method for stochastic noise evaluations in genetic
regulatory networks, where the covariance equation described as a Lyapunov equation …

Role of cooperative binding on noise expression

PS Gutierrez, D Monteoliva, L Diambra - Physical Review E—Statistical …, 2009 - APS
The origin of stochastic fluctuations in gene expression has received considerable attention
recently. Fluctuations in gene expression are particularly pronounced in cellular systems …

Roles of noise in single and coupled multiple genetic oscillators

M Yoda, T Ushikubo, W Inoue, M Sasai - The Journal of chemical …, 2007 - pubs.aip.org
The noisy fluctuation of chemical reactions should profoundly affect the oscillatory dynamics
of gene circuit. In this paper a prototypical genetic oscillator, repressilator, is numerically …

[HTML][HTML] How reliable is the linear noise approximation of gene regulatory networks?

P Thomas, H Matuschek, R Grima - BMC genomics, 2013 - Springer
Background The linear noise approximation (LNA) is commonly used to predict how noise is
regulated and exploited at the cellular level. These predictions are exact for reaction …

Spatio-temporal models of synthetic genetic oscillators

CK Macnamara, MAJ Chaplain - Mathematical Biosciences and …, 2017 - eprints.gla.ac.uk
Signal transduction pathways play a major role in many important aspects of cellular
function eg cell division, apoptosis. One important class of signal transduction pathways is …

[HTML][HTML] Fluctuations and slow variables in genetic networks

R Bundschuh, F Hayot, C Jayaprakash - Biophysical journal, 2003 - cell.com
Computer simulations of large genetic networks are often extremely time consuming
because, in addition to the biologically interesting translation and transcription reactions …

Dynamics of molecular fluctuations in gene regulatory networks

VH Pakka - 2009 - eprints.soton.ac.uk
The components that are central to cellular processing are proteins, whose production is
regulated by other proteins known as transcription factors. Proteins are products of genes …