Spatial genomics enables multi-modal study of clonal heterogeneity in tissues

T Zhao, ZD Chiang, JW Morriss, LM LaFave… - Nature, 2022 - nature.com
The state and behaviour of a cell can be influenced by both genetic and environmental
factors. In particular, tumour progression is determined by underlying genetic aberrations …

Spatially resolved clonal copy number alterations in benign and malignant tissue

A Erickson, M He, E Berglund, M Marklund… - Nature, 2022 - nature.com
Defining the transition from benign to malignant tissue is fundamental to improving early
diagnosis of cancer. Here we use a systematic approach to study spatial genome integrity in …

Spatial genomics maps the structure, nature and evolution of cancer clones

A Lomakin, J Svedlund, C Strell, M Gataric, A Shmatko… - Nature, 2022 - nature.com
Genome sequencing of cancers often reveals mosaics of different subclones present in the
same tumour,–. Although these are believed to arise according to the principles of somatic …

Genetic effects on gene expression across human tissues

GTEx Consortium Lead analysts: Aguet François 1 … - Nature, 2017 - nature.com
Abstract Characterization of the molecular function of the human genome and its variation
across individuals is essential for identifying the cellular mechanisms that underlie human …

Slide-tags enables single-nucleus barcoding for multimodal spatial genomics

AJC Russell, JA Weir, NM Nadaf, M Shabet, V Kumar… - Nature, 2024 - nature.com
Recent technological innovations have enabled the high-throughput quantification of gene
expression and epigenetic regulation within individual cells, transforming our understanding …

Extensive transcriptional heterogeneity revealed by isoform profiling

V Pelechano, W Wei, LM Steinmetz - Nature, 2013 - nature.com
Transcript function is determined by sequence elements arranged on an individual RNA
molecule. Variation in transcripts can affect messenger RNA stability, localization and …

Tumour evolution inferred by single-cell sequencing

N Navin, J Kendall, J Troge, P Andrews, L Rodgers… - Nature, 2011 - nature.com
Genomic analysis provides insights into the role of copy number variation in disease, but
most methods are not designed to resolve mixed populations of cells. In tumours, where …

The deepest differences

C Schubert - Nature, 2011 - nature.com
The deepest differences | Nature Skip to main content Thank you for visiting nature.com. You
are using a browser version with limited support for CSS. To obtain the best experience, we …

[HTML][HTML] Spatial profiling of chromatin accessibility in mouse and human tissues

Y Deng, M Bartosovic, S Ma, D Zhang, P Kukanja… - Nature, 2022 - nature.com
Cellular function in tissue is dependent on the local environment, requiring new methods for
spatial mapping of biomolecules and cells in the tissue context. The emergence of spatial …

Exploring tissue architecture using spatial transcriptomics

A Rao, D Barkley, GS França, I Yanai - Nature, 2021 - nature.com
Deciphering the principles and mechanisms by which gene activity orchestrates complex
cellular arrangements in multicellular organisms has far-reaching implications for research …