Single-Macromolecule Studies of Eukaryotic Genomic Maintenance

S Rudnizky, PJ Murray, CH Wolfe… - Annual Review of …, 2024 - annualreviews.org
Genomes are self-organized and self-maintained as long, complex macromolecules of
chromatin. The inherent heterogeneity, stochasticity, phase separation, and chromatin …

[HTML][HTML] Genome organization: balancing stability and plasticity

M Wachsmuth, M Caudron-Herger, K Rippe - Biochimica et Biophysica Acta …, 2008 - Elsevier
The cell needs to stably maintain its genome and protect it from uncontrolled modifications
that would compromise its function. At the same time, the genome has to be a plastic …

The self-stirred genome: large-scale chromatin dynamics, its biophysical origins and implications

A Zidovska - Current opinion in genetics & development, 2020 - Elsevier
The organization and dynamics of human genome govern all cellular processes—directly
impacting the central dogma of biology—yet are poorly understood, especially at large …

Studying genomic processes at the single-molecule level: introducing the tools and applications

D Dulin, J Lipfert, MC Moolman, NH Dekker - Nature Reviews Genetics, 2013 - nature.com
To understand genomic processes such as transcription, translation or splicing, we need to
be able to study their spatial and temporal organization at the molecular level. Single …

Dynamic chromatin technologies: from individual molecules to epigenomic regulation in cells

O Cuvier, B Fierz - Nature Reviews Genetics, 2017 - nature.com
The establishment and maintenance of chromatin states involves multiscale dynamic
processes integrating transcription factor and multiprotein effector dynamics, cycles of …

Spatial organization of chromosomes leads to heterogeneous chromatin motion and drives the liquid-or gel-like dynamical behavior of chromatin

H Salari, M Di Stefano, D Jost - Genome research, 2022 - genome.cshlp.org
Chromosome organization and dynamics are involved in regulating many fundamental
processes such as gene transcription and DNA repair. Experiments unveiled that chromatin …

The polymorphisms of the chromatin fiber

JB Boulé, J Mozziconacci… - Journal of Physics …, 2014 - iopscience.iop.org
In eukaryotes, the genome is packed into chromosomes, each consisting of large polymeric
fibers made of DNA bound with proteins (mainly histones) and RNA molecules. The nature …

Epigenomics and the structure of the living genome

N Friedman, OJ Rando - Genome research, 2015 - genome.cshlp.org
Eukaryotic genomes are packaged into an extensively folded state known as chromatin.
Analysis of the structure of eukaryotic chromosomes has been revolutionized by …

[HTML][HTML] Understanding and engineering chromatin as a dynamical system across length and timescales

CP Johnstone, NB Wang, SA Sevier, KE Galloway - Cell Systems, 2020 - cell.com
Connecting the molecular structure and function of chromatin across length and timescales
remains a grand challenge to understanding and engineering cellular behaviors. Across five …

[HTML][HTML] Exploring molecular biology in sequence space: the road to next-generation single-molecule biophysics

I Severins, C Joo, J van Noort - Molecular Cell, 2022 - cell.com
Next-generation sequencing techniques have led to a new quantitative dimension in the
biological sciences. In particular, integrating sequencing techniques with biophysical tools …