Deterministic tractography analysis of rat brain using SIGMA atlas in 9.4 T MRI

SJ Im, JY Suh, JH Shim, HM Baek - Brain sciences, 2021 - mdpi.com
Preclinical studies using rodents have been the choice for many neuroscience researchers
due totheir close reflection of human biology. In particular, research involving rodents has …

Processing pipeline for atlas-based imaging data analysis of structural and functional mouse brain MRI (AIDAmri)

N Pallast, M Diedenhofen, S Blaschke… - Frontiers in …, 2019 - frontiersin.org
Magnetic resonance imaging (MRI) is a key technology in multimodal animal studies of brain
connectivity and disease pathology. In vivo MRI provides non-invasive, whole brain …

[HTML][HTML] Towards reliable reconstruction of the mouse brain corticothalamic connectivity using diffusion MRI

TM Arefin, CH Lee, Z Liang, H Rallapalli, YZ Wadghiri… - Neuroimage, 2023 - Elsevier
Diffusion magnetic resonance imaging (dMRI) tractography has yielded intriguing insights
into brain circuits and their relationship to behavior in response to gene mutations or …

Semi-automated tractography analysis using a Allen mouse brain atlas: comparing DTI acquisition between NEX and SNR

SJ Im, HM Baek - J. Korean Soc. Radiol, 2020 - archive.ismrm.org
Although tractography research was focused primarily on the human brain, tractography was
integrated into animal models to benefit from various preclinical experiments. Accurate …

Population-averaged diffusion tensor imaging atlas of the Sprague Dawley rat brain

J Veraart, TB Leergaard, BT Antonsen, W Van Hecke… - Neuroimage, 2011 - Elsevier
Rats are widely used in experimental neurobiological research, and rat brain atlases are
important resources for identifying brain regions in the context of experimental microsurgery …

Towards reliable reconstruction of the mouse brain thalamocortical connectivity using diffusion MRI

TM Arefin, CH Lee, Z Liang, H Rallapalli, YZ Wadghiri… - bioRxiv, 2022 - biorxiv.org
Diffusion magnetic resonance imaging (dMRI) tractography has yielded intriguing insights
into brain circuits and their relationship to behavior in response to gene mutations or …

[HTML][HTML] A high-resolution interactive atlas of the human brainstem using magnetic resonance imaging

SM Adil, E Calabrese, LT Charalambous, JJ Cook… - Neuroimage, 2021 - Elsevier
Conventional atlases of the human brainstem are limited by the inflexible, sparsely-sampled,
two-dimensional nature of histology, or the low spatial resolution of conventional magnetic …

[HTML][HTML] High-resolution mapping and digital atlas of subcortical regions in the macaque monkey based on matched MAP-MRI and histology

KS Saleem, AV Avram, D Glen, CCC Yen, QY Frank… - Neuroimage, 2021 - Elsevier
Subcortical nuclei and other deep brain structures are known to play an important role in the
regulation of the central and peripheral nervous systems. It can be difficult to identify and …

A web-based atlas combining MRI and histology of the squirrel monkey brain

KG Schilling, Y Gao, M Christian, V Janve… - Neuroinformatics, 2019 - Springer
The squirrel monkey (Saimiri sciureus) is a commonly-used surrogate for humans in
biomedical research. In the neuroimaging community, MRI and histological atlases serve as …

Track-density imaging of the human brainstem for anatomic localization of fiber tracts and nerve nuclei in vivo: Initial experience with 3-T magnetic resonance imaging

H Wenz, M Al-Zghloul, E Hart, S Kurth, C Groden… - World Neurosurgery, 2016 - Elsevier
Background The brainstem comprises a large variety of fiber tracts and nerve nuclei and is
unarguably one of the most crucial parts of the brain. Reliable noninvasive visualization of …