[HTML][HTML] RiceLncPedia: a comprehensive database of rice long non‐coding RNAs

Z Zhang, Y Xu, F Yang, B Xiao, G Li - Plant Biotechnology Journal, 2021 - ncbi.nlm.nih.gov
RiceLncPedia: a comprehensive database of rice long non‐coding RNAs - PMC Back to Top
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CANTATAdb 2.0: expanding the collection of plant long noncoding RNAs

MW Szcześniak, O Bryzghalov… - Plant Long Non-Coding …, 2019 - Springer
Long non-coding RNAs (lncRNAs) are a class of potent regulators of gene expression that
are found in a wide array of eukaryotes; however, our knowledge about these molecules in …

CANTATAdb: a collection of plant long non-coding RNAs

MW Szcześniak, W Rosikiewicz… - Plant and Cell …, 2016 - academic.oup.com
Long non-coding RNAs (lncRNAs) represent a class of potent regulators of gene expression
that are found in a wide array of eukaryotes; however, our knowledge about these molecules …

Revealing the novel complexity of plant long non-coding RNA by strand-specific and whole transcriptome sequencing for evolutionarily representative plant species

Y Zhu, L Chen, X Hong, H Shi, X Li - BMC genomics, 2022 - Springer
Background Previous studies on plant long noncoding RNAs (lncRNAs) lacked consistency
and suffered from many factors like heterogeneous data sources and experimental …

CANTATAdb 3.0: an updated repository of plant long noncoding RNAs

MW Szcześniak, E Wanowska - Plant and Cell Physiology, 2024 - academic.oup.com
CANTATAdb 3.0 is an updated database of plant long non-coding RNAs (lncRNAs),
containing 571,688 lncRNAs identified across 108 species, including 100 Magnoliopsida …

RiceNCexp: a rice non-coding RNA co-expression atlas based on massive RNA-seq and small-RNA seq data

B Zhang, Y Fei, J Feng, X Zhu, R Wang… - Journal of …, 2022 - academic.oup.com
Non-coding RNAs (ncRNAs) play important roles in regulating expression of protein-coding
genes. Although gene expression databases have emerged in a timely manner, a …

PLncDB V2. 0: a comprehensive encyclopedia of plant long noncoding RNAs

J Jin, P Lu, Y Xu, Z Li, S Yu, J Liu, H Wang… - Nucleic Acids …, 2021 - academic.oup.com
Long noncoding RNAs (lncRNAs) are transcripts longer than 200 nucleotides with little or no
protein coding potential. The expanding list of lncRNAs and accumulating evidence of their …

Bioinformatics resources for deciphering the biogenesis and action pathways of plant small RNAs

D Yu, X Ma, Z Zuo, W Shao, H Wang, Y Meng - Rice, 2017 - Springer
The next-generation sequencing (NGS) technology has revolutionized our previous
understanding of the plant genomes, relying on its innate advantages, such as high …

The long noncoding RNA family gets bigger: thousands of new loci identified in natural Arabidopsis accessions

J Zicola - 2024 - academic.oup.com
Long noncoding RNAs (lncRNAs) are a class of RNA molecules that are longer than 200
nucleotides and are not translated into proteins. lncRNAs play important regulatory roles in …

Genome-wide identification of lncRNAs during rice seed development

J Zhao, AA Ajadi, Y Wang, X Tong, H Wang, L Tang… - Genes, 2020 - mdpi.com
Rice seed is a pivotal reproductive organ that directly determines yield and quality. Long
non-coding RNAs (lncRNAs) have been recognized as key regulators in plant development …