[HTML][HTML] Exposure to the gut microbiota drives distinct methylome and transcriptome changes in intestinal epithelial cells during postnatal development

WH Pan, F Sommer, M Falk-Paulsen, T Ulas, P Best… - Genome medicine, 2018 - Springer
Background The interplay of epigenetic processes and the intestinal microbiota may play an
important role in intestinal development and homeostasis. Previous studies have …

Gut microbiota as an epigenetic regulator: pilot study based on whole-genome methylation analysis

H Kumar, R Lund, A Laiho, K Lundelin, RE Ley… - MBio, 2014 - Am Soc Microbiol
The core human gut microbiota contributes to the developmental origin of diseases by
modifying metabolic pathways. To evaluate the predominant microbiota as an epigenetic …

[HTML][HTML] Postnatal epigenetic regulation of intestinal stem cells requires DNA methylation and is guided by the microbiome

DH Yu, M Gadkari, Q Zhou, S Yu, N Gao, Y Guan… - Genome biology, 2015 - Springer
Background DNA methylation is an epigenetic mechanism central to development and
maintenance of complex mammalian tissues, but our understanding of its role in intestinal …

The microbiota programs DNA methylation to control intestinal homeostasis and inflammation

I Ansari, G Raddatz, J Gutekunst, M Ridnik… - Nature …, 2020 - nature.com
Although much research has been done on the diversity of the gut microbiome, little is
known about how it influences intestinal homeostasis under normal and pathogenic …

[HTML][HTML] DNA methylation dynamics during intestinal stem cell differentiation reveals enhancers driving gene expression in the villus

LTJ Kaaij, M van de Wetering, F Fang, B Decato… - Genome biology, 2013 - Springer
Background DNA methylation is of pivotal importance during development. Previous
genome-wide studies identified numerous differentially methylated regions upon …

Epigenome-microbiome crosstalk: a potential new paradigm influencing neonatal susceptibility to disease

R Cortese, L Lu, Y Yu, D Ruden, EC Claud - Epigenetics, 2016 - Taylor & Francis
Preterm birth is the leading cause of infant morbidity and mortality. Necrotizing enterocolitis
(NEC) is an inflammatory bowel disease affecting primarily premature infants, which can be …

[HTML][HTML] Impact of the gut microbiome on the genome and epigenome of colon epithelial cells: contributions to colorectal cancer development

J Allen, CL Sears - Genome medicine, 2019 - Springer
In recent years, the number of studies investigating the impact of the gut microbiome in
colorectal cancer (CRC) has risen sharply. As a result, we now know that various microbes …

Microbiota modulate transcription in the intestinal epithelium without remodeling the accessible chromatin landscape

JG Camp, CL Frank, CR Lickwar, H Guturu… - Genome …, 2014 - genome.cshlp.org
Microbiota regulate intestinal physiology by modifying host gene expression along the
length of the intestine, but the underlying regulatory mechanisms remain unresolved …

[HTML][HTML] Microbiota-sensitive epigenetic signature predicts inflammation in Crohn's disease

D Kelly, M Kotliar, V Woo, S Jagannathan, J Whitt… - JCI insight, 2018 - ncbi.nlm.nih.gov
Altered response to the intestinal microbiota strongly associates with inflammatory bowel
disease (IBD); however, how commensal microbial cues are integrated by the host during …

[HTML][HTML] An obesity-associated gut microbiome reprograms the intestinal epigenome and leads to altered colonic gene expression

Y Qin, JD Roberts, SA Grimm, FB Lih, LJ Deterding… - Genome biology, 2018 - Springer
Background The gut microbiome, a key constituent of the colonic environment, has been
implicated as an important modulator of human health. The eukaryotic epigenome is …