A field guide to whole‐genome sequencing, assembly and annotation

R Ekblom, JBW Wolf - Evolutionary applications, 2014 - Wiley Online Library
Genome sequencing projects were long confined to biomedical model organisms and
required the concerted effort of large consortia. Rapid progress in high‐throughput …

Twelve quick steps for genome assembly and annotation in the classroom

H Jung, T Ventura, JS Chung, WJ Kim… - PLoS computational …, 2020 - journals.plos.org
Eukaryotic genome sequencing and de novo assembly, once the exclusive domain of well-
funded international consortia, have become increasingly affordable, thus fitting the budgets …

[HTML][HTML] The era of reference genomes in conservation genomics

G Formenti, K Theissinger, C Fernandes, I Bista… - Trends in ecology & …, 2022 - cell.com
Progress in genome sequencing now enables the large-scale generation of reference
genomes. Various international initiatives aim to generate reference genomes representing …

Sequencing breakthroughs for genomic ecology and evolutionary biology

ME Hudson - Molecular ecology resources, 2008 - Wiley Online Library
Techniques involving whole‐genome sequencing and whole‐population sequencing
(metagenomics) are beginning to revolutionize the study of ecology and evolution. This …

The changing face of genome assemblies: Guidance on achieving high‐quality reference genomes

A Whibley, JL Kelley, SR Narum - 2021 - Wiley Online Library
The quality of genome assemblies has improved rapidly in recent years due to continual
advances in sequencing technology, assembly approaches, and quality control. In the field …

Whole‐genome sequencing approaches for conservation biology: Advantages, limitations and practical recommendations

AP Fuentes‐Pardo, DE Ruzzante - Molecular ecology, 2017 - Wiley Online Library
Whole‐genome resequencing (WGR) is a powerful method for addressing fundamental
evolutionary biology questions that have not been fully resolved using traditional methods …

Toward a genome sequence for every animal: Where are we now?

S Hotaling, JL Kelley… - Proceedings of the …, 2021 - National Acad Sciences
In less than 25 y, the field of animal genome science has transformed from a discipline
seeking its first glimpses into genome sequences across the Tree of Life to a global …

A beginner's guide to eukaryotic genome annotation

M Yandell, D Ence - Nature Reviews Genetics, 2012 - nature.com
The falling cost of genome sequencing is having a marked impact on the research
community with respect to which genomes are sequenced and how and where they are …

Sequence locally, think globally: the Darwin Tree of Life Project

Darwin Tree of Life Project … - Proceedings of the …, 2022 - National Acad Sciences
The goals of the Earth Biogenome Project—to sequence the genomes of all eukaryotic life
on earth—are as daunting as they are ambitious. The Darwin Tree of Life Project was …

GAGE: A critical evaluation of genome assemblies and assembly algorithms

SL Salzberg, AM Phillippy, A Zimin, D Puiu… - Genome …, 2012 - genome.cshlp.org
New sequencing technology has dramatically altered the landscape of whole-genome
sequencing, allowing scientists to initiate numerous projects to decode the genomes of …