Reconstructing the DNA methylation maps of the Neandertal and the Denisovan

D Gokhman, E Lavi, K Prüfer, MF Fraga, JA Riancho… - science, 2014 - science.org
Ancient DNA sequencing has recently provided high-coverage archaic human genomes.
However, the evolution of epigenetic regulation along the human lineage remains largely …

[HTML][HTML] Pros and cons of methylation-based enrichment methods for ancient DNA

A Seguin-Orlando, C Gamba, CD Sarkissian… - Scientific Reports, 2015 - nature.com
The recent discovery that DNA methylation survives in fossil material provides an
opportunity for novel molecular approaches in palaeogenomics. Here, we apply to ancient …

Comparative methylome analyses identify epigenetic regulatory loci of human brain evolution

I Mendizabal, L Shi, TE Keller… - Molecular biology …, 2016 - academic.oup.com
How do epigenetic modifications change across species and how do these modifications
affect evolution? These are fundamental questions at the forefront of our evolutionary …

Genome-wide nucleosome map and cytosine methylation levels of an ancient human genome

JS Pedersen, E Valen, AMV Velazquez… - Genome …, 2014 - genome.cshlp.org
Epigenetic information is available from contemporary organisms, but is difficult to track back
in evolutionary time. Here, we show that genome-wide epigenetic information can be …

[HTML][HTML] High-resolution analysis of cytosine methylation in ancient DNA

B Llamas, ML Holland, K Chen, JE Cropley, A Cooper… - PLoS …, 2012 - journals.plos.org
Epigenetic changes to gene expression can result in heritable phenotypic characteristics
that are not encoded in the DNA itself, but rather by biochemical modifications to the DNA or …

The interplay between DNA methylation and sequence divergence in recent human evolution

I Hernando-Herraez, H Heyn… - Nucleic acids …, 2015 - academic.oup.com
Despite the increasing knowledge about DNA methylation, the understanding of human
epigenome evolution is in its infancy. Using whole genome bisulfite sequencing we …

[PDF][PDF] Reconstructing Denisovan anatomy using DNA methylation maps

D Gokhman, N Mishol, M de Manuel, D de Juan… - Cell, 2019 - cell.com
Denisovans are an extinct group of humans whose morphology remains unknown. Here, we
present a method for reconstructing skeletal morphology using DNA methylation patterns …

[PDF][PDF] Divergent whole-genome methylation maps of human and chimpanzee brains reveal epigenetic basis of human regulatory evolution

J Zeng, G Konopka, BG Hunt, TM Preuss… - The American Journal of …, 2012 - cell.com
DNA methylation is a pervasive epigenetic DNA modification that strongly affects chromatin
regulation and gene expression. To date, it remains largely unknown how patterns of DNA …

[HTML][HTML] Functional annotation of the human brain methylome identifies tissue-specific epigenetic variation across brain and blood

MN Davies, M Volta, R Pidsley, K Lunnon, A Dixit… - Genome biology, 2012 - Springer
Background Dynamic changes to the epigenome play a critical role in establishing and
maintaining cellular phenotype during differentiation, but little is known about the normal …

Global epigenomic reconfiguration during mammalian brain development

R Lister, EA Mukamel, JR Nery, M Urich, CA Puddifoot… - Science, 2013 - science.org
Introduction Several lines of evidence point to a key role for dynamic epigenetic changes
during brain development, maturation, and learning. DNA methylation (mC) is a stable …