Cutoff Finder: a comprehensive and straightforward Web application enabling rapid biomarker cutoff optimization
Gene or protein expression data are usually represented by metric or at least ordinal
variables. In order to translate a continuous variable into a clinical decision, it is necessary to …
variables. In order to translate a continuous variable into a clinical decision, it is necessary to …
X-tile: a new bio-informatics tool for biomarker assessment and outcome-based cut-point optimization
RL Camp, M Dolled-Filhart, DL Rimm - Clinical cancer research, 2004 - AACR
The ability to parse tumors into subsets based on biomarker expression has many clinical
applications; however, there is no global way to visualize the best cut-points for creating …
applications; however, there is no global way to visualize the best cut-points for creating …
“Good Old” clinical markers have similar power in breast cancer prognosis as microarray gene expression profilers
P Edén, C Ritz, C Rose, MA Fernö… - European journal of cancer, 2004 - Elsevier
We compared the power of gene expression measurements with that of conventional
prognostic markers, ie, clinical, histopathological, and cell biological parameters, for …
prognostic markers, ie, clinical, histopathological, and cell biological parameters, for …
Combining biomarkers to optimize patient treatment recommendations
C Kang, H Janes, Y Huang - Biometrics, 2014 - academic.oup.com
Markers that predict treatment effect have the potential to improve patient outcomes. For
example, the has some ability to predict the benefit of adjuvant chemotherapy over and …
example, the has some ability to predict the benefit of adjuvant chemotherapy over and …
[HTML][HTML] On representing the prognostic value of continuous gene expression biomarkers with the restricted mean survival curve
Results We illustrate the liabilities of common techniques for categorizing a risk score and
discuss alternative approaches. We promote the use of the restricted mean survival (RMS) …
discuss alternative approaches. We promote the use of the restricted mean survival (RMS) …
[HTML][HTML] Evaluate Cutpoints: Adaptable continuous data distribution system for determining survival in Kaplan-Meier estimator
M Ogłuszka, M Orzechowska, D Jędroszka… - Computer methods and …, 2019 - Elsevier
Abstract Background and Objective Growing evidence of transcriptional and metabolomic
differentiation induced many studies which analyze such differentiation in context of …
differentiation induced many studies which analyze such differentiation in context of …
Combining diagnostic test results to increase accuracy
MS Pepe, ML Thompson - Biostatistics, 2000 - academic.oup.com
When multiple diagnostic tests are performed on an individual or multiple disease markers
are available it may be possible to combine the information to diagnose disease. We …
are available it may be possible to combine the information to diagnose disease. We …
Biomarkers in cancer staging, prognosis and treatment selection
JA Ludwig, JN Weinstein - Nature Reviews Cancer, 2005 - nature.com
Advances in genomics, proteomics and molecular pathology have generated many
candidate biomarkers with potential clinical value. Their use for cancer staging and …
candidate biomarkers with potential clinical value. Their use for cancer staging and …
Breast cancer prognosis signature: linking risk stratification to disease subtypes
Breast cancer is a very complex and heterogeneous disease with variable molecular
mechanisms of carcinogenesis and clinical behaviors. The identification of prognostic risk …
mechanisms of carcinogenesis and clinical behaviors. The identification of prognostic risk …
[HTML][HTML] The Tumor Profiler Study: integrated, multi-omic, functional tumor profiling for clinical decision support
The application and integration of molecular profiling technologies create novel
opportunities for personalized medicine. Here, we introduce the Tumor Profiler Study, an …
opportunities for personalized medicine. Here, we introduce the Tumor Profiler Study, an …