Contributions of rpb2 and tef1 to the phylogeny of mushrooms and allies (Basidiomycota, Fungi)

PB Matheny, Z Wang, M Binder, JM Curtis… - Molecular phylogenetics …, 2007 - Elsevier
A phylogeny of the fungal phylum Basidiomycota is presented based on a survey of 160 taxa
and five nuclear genes. Two genes, rpb2, and tef1, are presented in detail. The rpb2 gene is …

Lower level relationships in the mushroom genus Cortinarius (Basidiomycota, Agaricales): a comparison of RPB1, RPB2, and ITS phylogenies

TG Frøslev, PB Matheny, DS Hibbett - Molecular Phylogenetics and …, 2005 - Elsevier
We sampled and analyzed approximately 2900bp across the three loci from 54 taxa
belonging to a taxonomically difficult group of Cortinarius subgenus Phlegmacium. The …

Improving phylogenetic inference of mushrooms with RPB1 and RPB2 nucleotide sequences (Inocybe; Agaricales)

PB Matheny - Molecular phylogenetics and evolution, 2005 - Elsevier
Approximately 3000 bp across 84 taxa have been analyzed for variable regions of RPB1,
RPB2, and nLSU-rDNA to infer phylogenetic relationships in the large ectomycorrhizal …

Using RPB1 sequences to improve phylogenetic inference among mushrooms (Inocybe, Agaricales)

PB Matheny, YJ Liu, JF Ammirati… - American Journal of …, 2002 - Wiley Online Library
An investigation of mushroom phylogeny using the largest subunit of RNA polymerase II
gene sequences (RPB1) was conducted in comparison with nuclear ribosomal large subunit …

A six-gene phylogenetic overview of Basidiomycota and allied phyla with estimated divergence times of higher taxa and a phyloproteomics perspective

RL Zhao, GJ Li, S Sánchez-Ramírez, M Stata, ZL Yang… - Fungal Diversity, 2017 - Springer
In this paper, we provide a phylogenetic overview of Basidiomycota and related phyla in
relation to ten years of DNA based phylogenetic studies since the AFTOL publications in …

New primers for promising single-copy genes in fungal phylogenetics and systematics

I Schmitt, A Crespo, PK Divakar… - … and Evolution of …, 2009 - ingentaconnect.com
Developing powerful phylogenetic markers is a key concern in fungal phylogenetics. Here
we report degenerate primers that amplify the single-copy genes Mcm7 (MS456) and Tsr1 …

Evolutionary relationships within the fungi: analyses of nuclear small subunit rRNA sequences

TD Bruns, R Vilgalys, SM Barns, D Gonzalez… - Molecular phylogenetics …, 1992 - Elsevier
Nucleotide sequences of the small subunit ribosomal RNA (18S) gene were used to
investigate evolutionary relationships within the Fungi. The inferred tree topologies are in …

Phylogenetic relationships in the mushroom genus Coprinus and dark-spored allies based on sequence data from the nuclear gene coding for the large ribosomal …

JS Hopple Jr, R Vilgalys - Molecular phylogenetics and evolution, 1999 - Elsevier
Phylogenetic relationships were investigated in the mushroom genus Coprinus based on
sequence data from the nuclear encoded large-subunit rDNA gene. Forty-seven species of …

The phylogenetic distribution of resupinate forms across the major clades of mushroom‐forming fungi (Homobasidiomycetes)

M Binder, DS Hibbett, KH Larsson… - Systematics and …, 2005 - Taylor & Francis
Phylogenetic relationships of resupinate Homobasidiomycetes (Corticiaceae s. lat. and
others) were studied using ribosomal DNA (rDNA) sequences from a broad sample of …

Resolving the phylogenetic position of the Wallemiomycetes: an enigmatic major lineage of Basidiomycota

PB Matheny, JA Gossmann, P Zalar, TKA Kumar… - Botany, 2006 - cdnsciencepub.com
The Wallemiomycetes includes three species of molds from the genus Wallemia. These
fungi are adapted to environments of high osmotic stress, contaminate various foods, cause …