Quantification of host and phage mRNA expression during infection using real-time PCR

MRJ Clokie - Bacteriophages: Methods and Protocols, Volume 2 …, 2009 - Springer
Real-time, or quantitative PCR, is a valuable technique useful in bacteriophage research to
quantify the abundance of phage or host gene transcripts. It can be used during the infection …

Preparation of RNA from Bacteria Infected with Bacteriophages: A Case Study from the Marine Unicellular Synechococcus sp. WH7803 Infected by Phage S-PM2

J Shan, M Clokie - Bacteriophages: Methods and Protocols, Volume 2 …, 2009 - Springer
Bacteriophages manipulate bacterial gene expression in order to express their own genes
or influence bacterial metabolism. Gene expression can be studied using real-time PCR or …

Real-time PCR provides improved detection and titer determination of bacteriophage

DC Edelman, J Barletta - Biotechniques, 2003 - Taylor & Francis
The plaque assay is the traditional method for the quantification of bacteriophage,
particularly for λ cloning vectors. Unfortunately, this technique is fraught with procedural …

PCR and partial sequencing of bacteriophage genomes

M Clokie - Bacteriophages: Methods and Protocols, Volume 2 …, 2009 - Springer
PCR is a quick and effective way of identifying the presence and 'affiliation'of
bacteriophages, or phage-encoded genes from environmental samples, bacterial cells or …

Global Transcriptional Responses of Pseudomonas aeruginosa to Phage PRR1 Infection

JJ Ravantti, TM Ruokoranta, AM Alapuranen… - Journal of …, 2008 - Am Soc Microbiol
The infectious cycles of viruses are known to cause dramatic changes to host cell function.
The development of microarray technology has provided means to monitor host cell …

A major-capsid-protein-based multiplex PCR assay for rapid identification of selected virulent bacteriophage types

Y Born, LE Knecht, M Eigenmann, M Bolliger… - Archives of …, 2019 - Springer
Bacteriophages represent a promising alternative for controlling pathogenic bacteria. They
are ubiquitous in the environment, and their isolation is usually simple and fast. However …

Use of bacteriophage MS2 as an internal control in viral reverse transcription-PCR assays

J Dreier, M Stormer, K Kleesiek - Journal of clinical microbiology, 2005 - Am Soc Microbiol
Diagnostic systems based on reverse transcription (RT)-PCR are widely used for the
detection of viral genomes in different human specimens. The application of internal controls …

Preparing cDNA libraries from lytic phage-infected cells for whole transcriptome analysis by RNA-Seq

B Blasdel, PJ Ceyssens, R Lavigne - Bacteriophages: Methods and …, 2018 - Springer
Whole genome wide analysis of transcription using RNA-Seq methods is a powerful way to
elucidate differential expression of gene features in bacteria across different conditions as …

Example of Use of TaqMan Real‐Time RT‐PCR to Analyze Bacterial Gene Transcript Levels: Haemophilus influenzae

JW Johnston - Current protocols in microbiology, 2009 - Wiley Online Library
The protocol in this unit describes the steps for gene expression analysis of Haemophilus
influenzae in broth culture. Steps for hot acid phenol RNA extraction, RNA cleanup …

Characterization of the Bacillus stearothermophilus phage Φμ-4 and its DNA

D Rabussay, W Zillig, P Herrlich - Virology, 1970 - Elsevier
Bacteriophage φμ-4 was purified from lysates by isoelectric precipitation and CsCl gradient
centrifugation. This phage displays an Escherichia coli phage lambda-like appearance in …