Measuring the distribution of fitness effects in somatic evolution by combining clonal dynamics with dN/dS ratios
The distribution of fitness effects (DFE) defines how new mutations spread through an
evolving population. The ratio of non-synonymous to synonymous mutations (dN/dS) has …
evolving population. The ratio of non-synonymous to synonymous mutations (dN/dS) has …
The Evolutionary Interplay of Somatic and Germline Mutation Rates
AC Beichman, L Zhu, K Harris - Annual Review of Biomedical …, 2024 - annualreviews.org
Novel sequencing technologies are making it increasingly possible to measure the mutation
rates of somatic cell lineages. Accurate germline mutation rate measurement technologies …
rates of somatic cell lineages. Accurate germline mutation rate measurement technologies …
Population heterogeneity in mutation rate increases the frequency of higher-order mutants and reduces long-term mutational load
HK Alexander, SI Mayer… - Molecular biology and …, 2017 - academic.oup.com
Mutation rate is a crucial evolutionary parameter that has typically been treated as a
constant in population genetic analyses. However, the propensity to mutate is likely to vary …
constant in population genetic analyses. However, the propensity to mutate is likely to vary …
The implications of small stem cell niche sizes and the distribution of fitness effects of new mutations in aging and tumorigenesis
VL Cannataro, SA McKinley… - Evolutionary …, 2016 - Wiley Online Library
Somatic tissue evolves over a vertebrate's lifetime due to the accumulation of mutations in
stem cell populations. Mutations may alter cellular fitness and contribute to tumorigenesis or …
stem cell populations. Mutations may alter cellular fitness and contribute to tumorigenesis or …
The distribution of fitness effects of new mutations
A Eyre-Walker, PD Keightley - Nature Reviews Genetics, 2007 - nature.com
The distribution of fitness effects (DFE) of new mutations is a fundamental entity in genetics
that has implications ranging from the genetic basis of complex disease to the stability of the …
that has implications ranging from the genetic basis of complex disease to the stability of the …
On measuring selection in cancer from subclonal mutation frequencies
Recently available cancer sequencing data have revealed a complex view of the cancer
genome containing a multitude of mutations, including drivers responsible for cancer …
genome containing a multitude of mutations, including drivers responsible for cancer …
Joint inference of the distribution of fitness effects of deleterious mutations and population demography based on nucleotide polymorphism frequencies
PD Keightley, A Eyre-Walker - Genetics, 2007 - academic.oup.com
The distribution of fitness effects of new mutations (DFE) is important for addressing several
questions in genetics, including the nature of quantitative variation and the evolutionary fate …
questions in genetics, including the nature of quantitative variation and the evolutionary fate …
On an unbiased and consistent estimator for mutation rates
BA Niccum, R Poteau, GE Hamman, JC Varada… - Journal of theoretical …, 2012 - Elsevier
Spontaneous mutations are stochastic events. The mutation rate, defined as mutations per
genome per replication, is generally very low, and it is widely accepted that spontaneous …
genome per replication, is generally very low, and it is widely accepted that spontaneous …
Selection threshold severely constrains capture of beneficial mutations
JC Sanford, JR Baumgardner… - Biological Information …, 2013 - World Scientific
Background. In a companion paper, careful numerical simulation was used to demonstrate
that there is a quantifiable selection threshold, below which low-impact deleterious …
that there is a quantifiable selection threshold, below which low-impact deleterious …
Mutations observed in somatic evolution reveal underlying gene mechanisms
Highly sensitive DNA sequencing techniques have allowed the discovery of large numbers
of somatic mutations in normal tissues. Some mutations confer a competitive advantage over …
of somatic mutations in normal tissues. Some mutations confer a competitive advantage over …