[HTML][HTML] Environmental DNA metabarcoding for benthic monitoring: A review of sediment sampling and DNA extraction methods
J Pawlowski, K Bruce, K Panksep, FI Aguirre… - Science of the Total …, 2022 - Elsevier
Environmental DNA (eDNA) metabarcoding (parallel sequencing of DNA/RNA for
identification of whole communities within a targeted group) is revolutionizing the field of …
identification of whole communities within a targeted group) is revolutionizing the field of …
Environmental DNA metabarcoding studies are critically affected by substrate selection
Effective biomonitoring is critical for driving management outcomes that ensure long‐term
sustainability of the marine environment. In recent years, environmental DNA (eDNA) …
sustainability of the marine environment. In recent years, environmental DNA (eDNA) …
[HTML][HTML] Detection of introduced and resident marine species using environmental DNA metabarcoding of sediment and water
Environmental DNA (eDNA) surveys are increasingly being used for biodiversity monitoring,
principally because they are sensitive and can provide high resolution community …
principally because they are sensitive and can provide high resolution community …
Advancing the use of molecular methods for routine freshwater macroinvertebrate biomonitoring–the need for calibration experiments
Over the last decade, steady advancements have been made in the use of DNA-based
methods for detection of species in a wide range of ecosystems. This progress has …
methods for detection of species in a wide range of ecosystems. This progress has …
[HTML][HTML] Watered-down biodiversity? A comparison of metabarcoding results from DNA extracted from matched water and bulk tissue biomonitoring samples
Biomonitoring programs have evolved beyond the sole use of morphological identification to
determine the composition of invertebrate species assemblages in an array of ecosystems …
determine the composition of invertebrate species assemblages in an array of ecosystems …
Comparison of environmental DNA metabarcoding and conventional fish survey methods in a river system
Regular biological surveys are essential for informed management of freshwater
ecosystems. However, current morphology-based biodiversity surveys can be invasive, time …
ecosystems. However, current morphology-based biodiversity surveys can be invasive, time …
Species‐level biodiversity assessment using marine environmental DNA metabarcoding requires protocol optimization and standardization
DNA extraction from environmental samples (environmental DNA; eDNA) for metabarcoding‐
based biodiversity studies is gaining popularity as a noninvasive, time‐efficient, and cost …
based biodiversity studies is gaining popularity as a noninvasive, time‐efficient, and cost …
Next‐generation monitoring of aquatic biodiversity using environmental DNA metabarcoding
Global biodiversity in freshwater and the oceans is declining at high rates. Reliable tools for
assessing and monitoring aquatic biodiversity, especially for rare and secretive species, are …
assessing and monitoring aquatic biodiversity, especially for rare and secretive species, are …
[HTML][HTML] DNA extraction replicates improve diversity and compositional dissimilarity in metabarcoding of eukaryotes in marine sediments
Human impact on marine benthic communities has traditionally been assessed using visible
morphological traits and has focused on the macrobenthos, whereas the ecologically …
morphological traits and has focused on the macrobenthos, whereas the ecologically …
[HTML][HTML] eDNA in subterranean ecosystems: Applications, technical aspects, and future prospects
Monitoring of biota is pivotal for the assessment and conservation of ecosystems.
Environments worldwide are being continuously and increasingly exposed to multiple …
Environments worldwide are being continuously and increasingly exposed to multiple …
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