[HTML][HTML] Environmental DNA metabarcoding for benthic monitoring: A review of sediment sampling and DNA extraction methods

J Pawlowski, K Bruce, K Panksep, FI Aguirre… - Science of the Total …, 2022 - Elsevier
Environmental DNA (eDNA) metabarcoding (parallel sequencing of DNA/RNA for
identification of whole communities within a targeted group) is revolutionizing the field of …

Environmental DNA metabarcoding studies are critically affected by substrate selection

A Koziol, M Stat, T Simpson, S Jarman… - Molecular Ecology …, 2019 - Wiley Online Library
Effective biomonitoring is critical for driving management outcomes that ensure long‐term
sustainability of the marine environment. In recent years, environmental DNA (eDNA) …

[HTML][HTML] Detection of introduced and resident marine species using environmental DNA metabarcoding of sediment and water

LE Holman, M de Bruyn, S Creer, G Carvalho… - Scientific reports, 2019 - nature.com
Environmental DNA (eDNA) surveys are increasingly being used for biodiversity monitoring,
principally because they are sensitive and can provide high resolution community …

Advancing the use of molecular methods for routine freshwater macroinvertebrate biomonitoring–the need for calibration experiments

RC Blackman, E Mächler, F Altermatt… - Metabarcoding and …, 2019 - zora.uzh.ch
Over the last decade, steady advancements have been made in the use of DNA-based
methods for detection of species in a wide range of ecosystems. This progress has …

[HTML][HTML] Watered-down biodiversity? A comparison of metabarcoding results from DNA extracted from matched water and bulk tissue biomonitoring samples

M Hajibabaei, TM Porter, CV Robinson, DJ Baird… - PloS one, 2019 - journals.plos.org
Biomonitoring programs have evolved beyond the sole use of morphological identification to
determine the composition of invertebrate species assemblages in an array of ecosystems …

Comparison of environmental DNA metabarcoding and conventional fish survey methods in a river system

JLA Shaw, LJ Clarke, SD Wedderburn, TC Barnes… - Biological …, 2016 - Elsevier
Regular biological surveys are essential for informed management of freshwater
ecosystems. However, current morphology-based biodiversity surveys can be invasive, time …

Species‐level biodiversity assessment using marine environmental DNA metabarcoding requires protocol optimization and standardization

GJ Jeunen, M Knapp, HG Spencer… - Ecology and …, 2019 - Wiley Online Library
DNA extraction from environmental samples (environmental DNA; eDNA) for metabarcoding‐
based biodiversity studies is gaining popularity as a noninvasive, time‐efficient, and cost …

Next‐generation monitoring of aquatic biodiversity using environmental DNA metabarcoding

A Valentini, P Taberlet, C Miaud, R Civade… - Molecular …, 2016 - Wiley Online Library
Global biodiversity in freshwater and the oceans is declining at high rates. Reliable tools for
assessing and monitoring aquatic biodiversity, especially for rare and secretive species, are …

[HTML][HTML] DNA extraction replicates improve diversity and compositional dissimilarity in metabarcoding of eukaryotes in marine sediments

A Lanzén, K Lekang, I Jonassen, EM Thompson… - PLoS …, 2017 - journals.plos.org
Human impact on marine benthic communities has traditionally been assessed using visible
morphological traits and has focused on the macrobenthos, whereas the ecologically …

[HTML][HTML] eDNA in subterranean ecosystems: Applications, technical aspects, and future prospects

M Saccò, MT Guzik, M van der Heyde, P Nevill… - Science of the Total …, 2022 - Elsevier
Monitoring of biota is pivotal for the assessment and conservation of ecosystems.
Environments worldwide are being continuously and increasingly exposed to multiple …