IsoXpressor: a tool to assess transcriptional activity within isochores
Genomes are characterized by large regions of homogeneous base compositions known as
isochores. The latter are divided into GC-poor and GC-rich classes linked to distinct …
isochores. The latter are divided into GC-poor and GC-rich classes linked to distinct …
Transcriptome map of mouse isochores
Background The availability of fully sequenced genomes and the implementation of
transcriptome technologies have increased the studies investigating the expression profiles …
transcriptome technologies have increased the studies investigating the expression profiles …
[HTML][HTML] Transcriptome map of mouse isochores in embryonic and neonatal cortex
Several studies on adult tissues agree on the presence of a positive effect of the genomic
and genic base composition on mammalian gene expression. Recent literature supports the …
and genic base composition on mammalian gene expression. Recent literature supports the …
GC3 of genes can be used as a proxy for isochore base composition: a reply to Elhaik et al.
OK Clay, G Bernardi - Molecular Biology and Evolution, 2011 - academic.oup.com
In an article published in these pages, Elhaik et al.(Elhaik E, Landan G, Graur D. 2009. Can
GC content at third-codon positions be used as a proxy for isochore composition? Mol Biol …
GC content at third-codon positions be used as a proxy for isochore composition? Mol Biol …
Can GC content at third-codon positions be used as a proxy for isochore composition?
The isochore theory depicts the genomes of warm-blooded vertebrates as a mosaic of long
genomic regions that are characterized by relatively homogeneous GC content. In the …
genomic regions that are characterized by relatively homogeneous GC content. In the …
Segmenting the human genome into isochores
P Cozzi, L Milanesi, G Bernardi - Evolutionary Bioinformatics, 2015 - journals.sagepub.com
The human genome is a mosaic of isochores, which are long (> 200 kb) DNA sequences
that are fairly homogeneous in base composition and can be assigned to five families …
that are fairly homogeneous in base composition and can be assigned to five families …
An isochore map of human chromosomes
Isochores are large DNA segments (≫ 300 kb on average) that are characterized by an
internal variation in GC well below the full variation seen in the mammalian genome …
internal variation in GC well below the full variation seen in the mammalian genome …
Biological implications of isochore boundaries in the human genome
WX Zheng, CT Zhang - Journal of Biomolecular Structure and …, 2008 - Taylor & Francis
The human genome is composed of large sequence segments with fairly homogeneous GC
content, namely isochores, which have been linked to many important functions; biological …
content, namely isochores, which have been linked to many important functions; biological …
How not to search for isochores: a reply to Cohen et al
O Clay, G Bernardi - Molecular biology and evolution, 2005 - academic.oup.com
In a recent paper in these pages, Cohen et al. search for isochores in the human genome,
based on a system of attributes that they assign to isochores. The putative isochores that …
based on a system of attributes that they assign to isochores. The putative isochores that …
The evolution of isochore patterns in vertebrate genomes
M Costantini, R Cammarano, G Bernardi - BMC genomics, 2009 - Springer
Background Previous work from our laboratory showed that (i) vertebrate genomes are
mosaics of isochores, typically megabase-size DNA segments that are fairly homogeneous …
mosaics of isochores, typically megabase-size DNA segments that are fairly homogeneous …