Using experimental data and information criteria to guide model selection for reaction–diffusion problems in mathematical biology
Reaction–diffusion models describing the movement, reproduction and death of individuals
within a population are key mathematical modelling tools with widespread applications in …
within a population are key mathematical modelling tools with widespread applications in …
Parameter identifiability and model selection for partial differential equation models of cell invasion
When employing mechanistic models to study biological phenomena, practical parameter
identifiability is important for making accurate predictions across wide ranges of unseen …
identifiability is important for making accurate predictions across wide ranges of unseen …
Learning equations from biological data with limited time samples
Equation learning methods present a promising tool to aid scientists in the modeling process
for biological data. Previous equation learning studies have demonstrated that these …
for biological data. Previous equation learning studies have demonstrated that these …
Conflicting biomedical assumptions for mathematical modeling: the case of cancer metastasis
Computational models in biomedicine rely on biological and clinical assumptions. The
selection of these assumptions contributes substantially to modeling success or failure …
selection of these assumptions contributes substantially to modeling success or failure …
[HTML][HTML] Modelling count data with partial differential equation models in biology
Partial differential equation (PDE) models are often used to study biological phenomena
involving movement-birth–death processes, including ecological population dynamics and …
involving movement-birth–death processes, including ecological population dynamics and …
Methods of model reduction for large-scale biological systems: a survey of current methods and trends
TJ Snowden, PH van der Graaf, MJ Tindall - Bulletin of mathematical …, 2017 - Springer
Complex models of biochemical reaction systems have become increasingly common in the
systems biology literature. The complexity of such models can present a number of …
systems biology literature. The complexity of such models can present a number of …
Bayesian parameter identification for turing systems on stationary and evolving domains
E Campillo-Funollet, C Venkataraman… - Bulletin of mathematical …, 2019 - Springer
In this study, we apply the Bayesian paradigm for parameter identification to a well-studied
semi-linear reaction–diffusion system with activator-depleted reaction kinetics, posed on …
semi-linear reaction–diffusion system with activator-depleted reaction kinetics, posed on …
Bayesian calibration, validation, and uncertainty quantification of diffuse interface models of tumor growth
A Hawkins-Daarud, S Prudhomme… - Journal of mathematical …, 2013 - Springer
The idea that one can possibly develop computational models that predict the emergence,
growth, or decline of tumors in living tissue is enormously intriguing as such predictions …
growth, or decline of tumors in living tissue is enormously intriguing as such predictions …
Practical parameter identifiability for spatio-temporal models of cell invasion
MJ Simpson, RE Baker… - Journal of the …, 2020 - royalsocietypublishing.org
We examine the practical identifiability of parameters in a spatio-temporal reaction–diffusion
model of a scratch assay. Experimental data involve fluorescent cell cycle labels, providing …
model of a scratch assay. Experimental data involve fluorescent cell cycle labels, providing …
[HTML][HTML] Generative models of morphogenesis in developmental biology
NR Stillman, R Mayor - Seminars in Cell & Developmental Biology, 2023 - Elsevier
Understanding the mechanism by which cells coordinate their differentiation and migration
is critical to our understanding of many fundamental processes such as wound healing …
is critical to our understanding of many fundamental processes such as wound healing …