[HTML][HTML] PubChem chemical structure standardization
Background PubChem is a chemical information repository, consisting of three primary
databases: Substance, Compound, and BioAssay. When individual data contributors submit …
databases: Substance, Compound, and BioAssay. When individual data contributors submit …
[HTML][HTML] PubChem3D: a new resource for scientists
Background PubChem is an open repository for small molecules and their experimental
biological activity. PubChem integrates and provides search, retrieval, visualization …
biological activity. PubChem integrates and provides search, retrieval, visualization …
[HTML][HTML] Towards a Universal SMILES representation-A standard method to generate canonical SMILES based on the InChI
NM O'Boyle - Journal of cheminformatics, 2012 - Springer
Background There are two line notations of chemical structures that have established
themselves in the field: the SMILES string and the InChI string. The InChI aims to provide a …
themselves in the field: the SMILES string and the InChI string. The InChI aims to provide a …
[HTML][HTML] The Chemistry Development Kit (CDK) v2. 0: atom typing, depiction, molecular formulas, and substructure searching
Abstract Background The Chemistry Development Kit (CDK) is a widely used open source
cheminformatics toolkit, providing data structures to represent chemical concepts along with …
cheminformatics toolkit, providing data structures to represent chemical concepts along with …
[HTML][HTML] InChI-the worldwide chemical structure identifier standard
Since its public introduction in 2005 the IUPAC InChI chemical structure identifier standard
has become the international, worldwide standard for defined chemical structures. This …
has become the international, worldwide standard for defined chemical structures. This …
[HTML][HTML] Open Babel: An open chemical toolbox
NM O'Boyle, M Banck, CA James, C Morley… - Journal of …, 2011 - Springer
Background A frequent problem in computational modeling is the interconversion of
chemical structures between different formats. While standard interchange formats exist (for …
chemical structures between different formats. While standard interchange formats exist (for …
A quality alert and call for improved curation of public chemistry databases
AJ Williams, S Ekins - Drug Discovery Today, 2011 - Elsevier
In the last ten years, public online databases have rapidly become trusted valuable
resources upon which researchers rely for their chemical structures and data for use in …
resources upon which researchers rely for their chemical structures and data for use in …
[HTML][HTML] ClassyFire: automated chemical classification with a comprehensive, computable taxonomy
Y Djoumbou Feunang, R Eisner, C Knox… - Journal of …, 2016 - Springer
Background Scientists have long been driven by the desire to describe, organize, classify,
and compare objects using taxonomies and/or ontologies. In contrast to biology, geology …
and compare objects using taxonomies and/or ontologies. In contrast to biology, geology …
[HTML][HTML] InChI version 1.06: now more than 99.99% reliable
JM Goodman, I Pletnev, P Thiessen, E Bolton… - Journal of …, 2021 - Springer
The software for the IUPAC Chemical Identifier, InChI, is extraordinarily reliable. It has been
tested on large databases around the world, and has proved itself to be an essential tool in …
tested on large databases around the world, and has proved itself to be an essential tool in …
Exploring chemical information in PubChem
S Kim - Current protocols, 2021 - Wiley Online Library
Abstract PubChem (https://pubchem. ncbi. nlm. nih. gov) is a public chemical database that
serves scientific communities as well as the general public. This database collects chemical …
serves scientific communities as well as the general public. This database collects chemical …