Outbreak. info genomic reports: scalable and dynamic surveillance of SARS-CoV-2 variants and mutations
K Gangavarapu, AA Latif, JL Mullen, M Alkuzweny… - Nature …, 2023 - nature.com
In response to the emergence of SARS-CoV-2 variants of concern, the global scientific
community, through unprecedented effort, has sequenced and shared over 11 million …
community, through unprecedented effort, has sequenced and shared over 11 million …
ViralFlow: a versatile automated workflow for SARS-CoV-2 genome assembly, lineage assignment, mutations and intrahost variant detection
FZ Dezordi, AMS Neto, TL Campos, PMC Jeronimo… - Viruses, 2022 - mdpi.com
The COVID-19 pandemic is driven by Severe Acute Respiratory Syndrome coronavirus 2
(SARS-CoV-2) that emerged in 2019 and quickly spread worldwide. Genomic surveillance …
(SARS-CoV-2) that emerged in 2019 and quickly spread worldwide. Genomic surveillance …
Global landscape of SARS-CoV-2 genomic surveillance and data sharing
Genomic surveillance has shaped our understanding of severe acute respiratory syndrome
coronavirus 2 (SARS-CoV-2) variants. We performed a global landscape analysis on SARS …
coronavirus 2 (SARS-CoV-2) variants. We performed a global landscape analysis on SARS …
Tracking SARS-CoV-2 variants and resources
BB Oude Munnink, M Koopmans - Nature Methods, 2023 - nature.com
Tracking SARS-CoV-2 variants and resources | Nature Methods Skip to main content Thank
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Want to track pandemic variants faster? Fix the bioinformatics bottleneck
Want to track pandemic variants faster? Fix the bioinformatics bottleneck Skip to main content
Thank you for visiting nature.com. You are using a browser version with limited support for …
Thank you for visiting nature.com. You are using a browser version with limited support for …
Sequencing identifies multiple early introductions of SARS-CoV-2 to the New York City region
MT Maurano, S Ramaswami, P Zappile… - Genome …, 2020 - genome.cshlp.org
Effective public response to a pandemic relies upon accurate measurement of the extent
and dynamics of an outbreak. Viral genome sequencing has emerged as a powerful …
and dynamics of an outbreak. Viral genome sequencing has emerged as a powerful …
Challenges and opportunities for global genomic surveillance strategies in the COVID-19 era
Global SARS-CoV-2 genomic surveillance efforts have provided critical data on the ongoing
evolution of the virus to inform best practices in clinical care and public health throughout the …
evolution of the virus to inform best practices in clinical care and public health throughout the …
Global disparities in SARS-CoV-2 genomic surveillance
Genomic sequencing is essential to track the evolution and spread of SARS-CoV-2, optimize
molecular tests, treatments, vaccines, and guide public health responses. To investigate the …
molecular tests, treatments, vaccines, and guide public health responses. To investigate the …
[HTML][HTML] Global SARS-CoV-2 genomic surveillance: What we have learned (so far)
The COVID-19 pandemic has brought significant challenges for genomic surveillance
strategies in public health systems worldwide. During the past thirty-four months, many …
strategies in public health systems worldwide. During the past thirty-four months, many …
The evolving SARS-CoV-2 epidemic in Africa: Insights from rapidly expanding genomic surveillance
Investment in severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) sequencing
in Africa over the past year has led to a major increase in the number of sequences that …
in Africa over the past year has led to a major increase in the number of sequences that …