Multi-drug resistance in bacterial genomes—A comprehensive bioinformatic analysis

CPF Domingues, JS Rebelo, F Dionisio… - International Journal of …, 2023 - mdpi.com
Antimicrobial resistance is presently one of the greatest threats to public health. The
excessive and indiscriminate use of antibiotics imposes a continuous selective pressure that …

Coping with antibiotic resistance: contributions from genomics

GM Rossolini, MC Thaller - Genome medicine, 2010 - Springer
Antibiotic resistance is a public health issue of global dimensions with a significant impact
on morbidity, mortality and healthcare-associated costs. The problem has recently been …

Review and comparison of antimicrobial resistance gene databases

M Papp, N Solymosi - Antibiotics, 2022 - mdpi.com
As the prevalence of antimicrobial resistance genes is increasing in microbes, we are facing
the return of the pre-antibiotic era. Consecutively, the number of studies concerning …

Emergence of dominant multidrug-resistant bacterial clades: Lessons from history and whole-genome sequencing

EJ Klemm, VK Wong, G Dougan - Proceedings of the …, 2018 - National Acad Sciences
Antibiotic resistance in bacteria has emerged as a global challenge over the past 90 years,
compromising our ability to effectively treat infections. There has been a dramatic increase in …

Investigation of antibiotic resistance in the genomic era of multidrug-resistant Gram-negative bacilli, especially Enterobacteriaceae, Pseudomonas and Acinetobacter

SM Diene, JM Rolain - Expert Review of Anti-infective Therapy, 2013 - Taylor & Francis
The increase and spread of multidrug-resistant (MDR) Gram-negative bacteria, including
Enterobacteriaceae, Pseudomonas and Acinetobacter species, have become major …

GWAMAR: Genome-wide assessment of mutations associated with drug resistance in bacteria

M Wozniak, J Tiuryn, L Wong - BMC genomics, 2014 - Springer
Background Development of drug resistance in bacteria causes antibiotic therapies to be
less effective and more costly. Moreover, our understanding of the process remains …

A Comprehensive Bioinformatics Resource Guide for Genome-Based Antimicrobial Resistance Studies

D Samantray, AS Tanwar, TS Murali… - OMICS: A Journal of …, 2023 - liebertpub.com
The use of high-throughput sequencing technologies and bioinformatic tools has greatly
transformed microbial genome research. With the help of sophisticated computational tools …

The comprehensive antibiotic resistance database

AG McArthur, N Waglechner, F Nizam… - Antimicrobial agents …, 2013 - Am Soc Microbiol
The field of antibiotic drug discovery and the monitoring of new antibiotic resistance
elements have yet to fully exploit the power of the genome revolution. Despite the fact that …

Capturing the resistome: a targeted capture method to reveal antibiotic resistance determinants in metagenomes

AK Guitor, AR Raphenya, J Klunk, M Kuch… - Antimicrobial agents …, 2019 - Am Soc Microbiol
Identification of the nucleotide sequences encoding antibiotic resistance elements and
determination of their association with antibiotic resistance are critical to improve …

Draft genome sequences of multidrug-resistant Escherichia coli isolated from river water

II Kassem, J Hassan, MA Esseili, D Mann… - Microbiology …, 2022 - Am Soc Microbiol
The spread of antibiotic resistance poses a critical challenge worldwide. Contaminated
environments can become reservoirs, spreading antibiotic-resistant bacteria and genetic …