Everything OLD is new again: How structural, functional, and bioinformatic advances have redefined a neglected nuclease family

EW Dot, LC Thomason, JS Chappie - Molecular Microbiology, 2023 - Wiley Online Library
Overcoming lysogenization defect (OLD) proteins are a conserved family of ATP‐powered
nucleases that function in anti‐phage defense. Recent bioinformatic, genetic, and …

[HTML][HTML] OLD family nuclease function across diverse anti-phage defense systems

K Akritidou, BH Thurtle-Schmidt - Frontiers in Microbiology, 2023 - frontiersin.org
Bacteriophages constitute a ubiquitous threat to bacteria, and bacteria have evolved
numerous anti-phage defense systems to protect themselves. These systems include well …

Structural characterization of Class 2 OLD family nucleases supports a two-metal catalysis mechanism for cleavage

CJ Schiltz, A Lee, EA Partlow, CJ Hosford… - Nucleic Acids …, 2019 - academic.oup.com
Overcoming lysogenization defect (OLD) proteins constitute a family of uncharacterized
nucleases present in bacteria, archaea, and some viruses. These enzymes contain an N …

The full-length structure of Thermus scotoductus OLD defines the ATP hydrolysis properties and catalytic mechanism of Class 1 OLD family nucleases

CJ Schiltz, MC Adams, JS Chappie - Nucleic Acids Research, 2020 - academic.oup.com
OLD family nucleases contain an N-terminal ATPase domain and a C-terminal Toprim
domain. Homologs segregate into two classes based on primary sequence length and the …

[HTML][HTML] Molecular and structural basis of an ATPase-nuclease dual-enzyme anti-phage defense complex

Q An, Y Wang, Z Tian, J Han, J Li, F Liao, F Yu, H Zhao… - Cell Research, 2024 - nature.com
Coupling distinct enzymatic effectors emerges as an efficient strategy for defense against
phage infection in bacterial immune responses, such as the widely studied nuclease and …

Nucleases: diversity of structure, function and mechanism

W Yang - Quarterly reviews of biophysics, 2011 - cambridge.org
Nucleases cleave the phosphodiester bonds of nucleic acids and may be endo or exo,
DNase or RNase, topoisomerases, recombinases, ribozymes, or RNA splicing enzymes. In …

Terminase subunits from the Pseudomonas-phage E217

RK Lokareddy, CFD Hou, SG Doll, F Li… - Journal of molecular …, 2022 - Elsevier
Pseudomonas phages are increasingly important biomedicines for phage therapy, but little
is known about how these viruses package DNA. This paper explores the terminase …

[HTML][HTML] Structures, mechanisms, and functions of His-Me finger nucleases

CC Wu, JLJ Lin, HS Yuan - Trends in Biochemical Sciences, 2020 - cell.com
His-Me finger (also called HNH or ββα-me) nucleases, are a large superfamily of nucleases
that share limited sequence homology, but all members carry a highly similar catalytic motif …

[HTML][HTML] Distant structural homology leads to the functional characterization of an archaeal PIN domain as an exonuclease

VL Arcus, K Bäckbro, A Roos, EL Daniel… - Journal of Biological …, 2004 - ASBMB
Genome sequencing projects have focused attention on the problem of discovering the
functions of protein domains that are widely distributed throughout living species but which …

Structure-specific nucleases in genome dynamics and strategies for targeting cancers

H Sun, M Luo, M Zhou, L Zheng, H Li… - Journal of Molecular …, 2024 - academic.oup.com
Nucleases are a super family of enzymes that hydrolyze phosphodiester bonds present in
genomes. They widely vary in substrates, causing differentiation in cleavage patterns and …