FungiDB: an integrated bioinformatic resource for fungi and oomycetes
FungiDB (fungidb. org) is a free online resource for data mining and functional genomics
analysis for fungal and oomycete species. FungiDB is part of the Eukaryotic Pathogen …
analysis for fungal and oomycete species. FungiDB is part of the Eukaryotic Pathogen …
FungiDB: an integrated functional genomics database for fungi
JE Stajich, T Harris, BP Brunk, J Brestelli… - Nucleic acids …, 2012 - academic.oup.com
Abstract FungiDB (http://FungiDB. org) is a functional genomic resource for pan-fungal
genomes that was developed in partnership with the Eukaryotic Pathogen Bioinformatic …
genomes that was developed in partnership with the Eukaryotic Pathogen Bioinformatic …
FungiFun2: a comprehensive online resource for systematic analysis of gene lists from fungal species
Systematically extracting biological meaning from omics data is a major challenge in
systems biology. Enrichment analysis is often used to identify characteristic patterns in …
systems biology. Enrichment analysis is often used to identify characteristic patterns in …
MycoCosm portal: gearing up for 1000 fungal genomes
IV Grigoriev, R Nikitin, S Haridas, A Kuo… - Nucleic acids …, 2014 - academic.oup.com
MycoCosm is a fungal genomics portal (http://jgi. doe. gov/fungi), developed by the US
Department of Energy Joint Genome Institute to support integration, analysis and …
Department of Energy Joint Genome Institute to support integration, analysis and …
The Aspergillus Genome Database: multispecies curation and incorporation of RNA-Seq data to improve structural gene annotations
GC Cerqueira, MB Arnaud, DO Inglis… - Nucleic acids …, 2014 - academic.oup.com
Abstract The Aspergillus Genome Database (AspGD; http://www. aspgd. org) is a freely
available web-based resource that was designed for Aspergillus researchers and is also a …
available web-based resource that was designed for Aspergillus researchers and is also a …
FTFD: an informatics pipeline supporting phylogenomic analysis of fungal transcription factors
Genomes of more than 60 fungal species have been sequenced to date, yet there has been
no systematic approach to analyze fungal transcription factors (TFs) kingdom widely. We …
no systematic approach to analyze fungal transcription factors (TFs) kingdom widely. We …
Fungal genomics and pathogenicity
OC Yoder, BG Turgeon - Current opinion in plant biology, 2001 - Elsevier
The filamentous fungal genetics community has enthusiastically embraced the utilization of
genomics technologies to resolve long-standing issues in fungal biology. For example, such …
genomics technologies to resolve long-standing issues in fungal biology. For example, such …
Improving taxonomic delimitation of fungal species in the age of genomics and phenomics
A Stengel, KM Stanke, AC Quattrone… - Frontiers in …, 2022 - frontiersin.org
Species concepts have long provided a source of debate among biologists. These lively
debates have been important for reaching consensus on how to communicate across …
debates have been important for reaching consensus on how to communicate across …
The Aspergillus Genome Database (AspGD): recent developments in comprehensive multispecies curation, comparative genomics and community resources
MB Arnaud, GC Cerqueira, DO Inglis… - Nucleic acids …, 2012 - academic.oup.com
Abstract The Aspergillus Genome Database (AspGD; http://www. aspgd. org) is a freely
available, web-based resource for researchers studying fungi of the genus Aspergillus …
available, web-based resource for researchers studying fungi of the genus Aspergillus …
The Aspergillus Genome Database, a curated comparative genomics resource for gene, protein and sequence information for the Aspergillus research community
MB Arnaud, MC Chibucos, MC Costanzo… - Nucleic acids …, 2010 - academic.oup.com
ABSTRACT The Aspergillus Genome Database (AspGD) is an online genomics resource for
researchers studying the genetics and molecular biology of the Aspergilli. AspGD combines …
researchers studying the genetics and molecular biology of the Aspergilli. AspGD combines …