FungiDB: an integrated bioinformatic resource for fungi and oomycetes

EY Basenko, JA Pulman, A Shanmugasundram… - Journal of Fungi, 2018 - mdpi.com
FungiDB (fungidb. org) is a free online resource for data mining and functional genomics
analysis for fungal and oomycete species. FungiDB is part of the Eukaryotic Pathogen …

FungiDB: an integrated functional genomics database for fungi

JE Stajich, T Harris, BP Brunk, J Brestelli… - Nucleic acids …, 2012 - academic.oup.com
Abstract FungiDB (http://FungiDB. org) is a functional genomic resource for pan-fungal
genomes that was developed in partnership with the Eukaryotic Pathogen Bioinformatic …

FungiFun2: a comprehensive online resource for systematic analysis of gene lists from fungal species

S Priebe, C Kreisel, F Horn, R Guthke, J Linde - Bioinformatics, 2015 - academic.oup.com
Systematically extracting biological meaning from omics data is a major challenge in
systems biology. Enrichment analysis is often used to identify characteristic patterns in …

MycoCosm portal: gearing up for 1000 fungal genomes

IV Grigoriev, R Nikitin, S Haridas, A Kuo… - Nucleic acids …, 2014 - academic.oup.com
MycoCosm is a fungal genomics portal (http://jgi. doe. gov/fungi), developed by the US
Department of Energy Joint Genome Institute to support integration, analysis and …

The Aspergillus Genome Database: multispecies curation and incorporation of RNA-Seq data to improve structural gene annotations

GC Cerqueira, MB Arnaud, DO Inglis… - Nucleic acids …, 2014 - academic.oup.com
Abstract The Aspergillus Genome Database (AspGD; http://www. aspgd. org) is a freely
available web-based resource that was designed for Aspergillus researchers and is also a …

FTFD: an informatics pipeline supporting phylogenomic analysis of fungal transcription factors

J Park, J Park, S Jang, S Kim, S Kong, J Choi… - …, 2008 - academic.oup.com
Genomes of more than 60 fungal species have been sequenced to date, yet there has been
no systematic approach to analyze fungal transcription factors (TFs) kingdom widely. We …

Fungal genomics and pathogenicity

OC Yoder, BG Turgeon - Current opinion in plant biology, 2001 - Elsevier
The filamentous fungal genetics community has enthusiastically embraced the utilization of
genomics technologies to resolve long-standing issues in fungal biology. For example, such …

Improving taxonomic delimitation of fungal species in the age of genomics and phenomics

A Stengel, KM Stanke, AC Quattrone… - Frontiers in …, 2022 - frontiersin.org
Species concepts have long provided a source of debate among biologists. These lively
debates have been important for reaching consensus on how to communicate across …

The Aspergillus Genome Database (AspGD): recent developments in comprehensive multispecies curation, comparative genomics and community resources

MB Arnaud, GC Cerqueira, DO Inglis… - Nucleic acids …, 2012 - academic.oup.com
Abstract The Aspergillus Genome Database (AspGD; http://www. aspgd. org) is a freely
available, web-based resource for researchers studying fungi of the genus Aspergillus …

The Aspergillus Genome Database, a curated comparative genomics resource for gene, protein and sequence information for the Aspergillus research community

MB Arnaud, MC Chibucos, MC Costanzo… - Nucleic acids …, 2010 - academic.oup.com
ABSTRACT The Aspergillus Genome Database (AspGD) is an online genomics resource for
researchers studying the genetics and molecular biology of the Aspergilli. AspGD combines …