The evolution of transcriptional regulation in eukaryotes

GA Wray, MW Hahn, E Abouheif… - Molecular biology …, 2003 - academic.oup.com
Gene expression is central to the genotype-phenotype relationship in all organisms, and it is
an important component of the genetic basis for evolutionary change in diverse aspects of …

Molecular and evolutionary processes generating variation in gene expression

MS Hill, P Vande Zande, PJ Wittkopp - Nature Reviews Genetics, 2021 - nature.com
Heritable variation in gene expression is common within and between species. This
variation arises from mutations that alter the form or function of molecular gene regulatory …

The evolution of gene expression in cis and trans

SA Signor, SV Nuzhdin - Trends in Genetics, 2018 - cell.com
There is abundant variation in gene expression between individuals, populations, and
species. The evolution of gene regulation and expression within and between species is …

The gateway to transcription: identifying, characterizing and understanding promoters in the eukaryotic genome

ND Heintzman, B Ren - Cellular and Molecular Life Sciences, 2007 - Springer
Eukaryotic transcriptional regulation requires the integration of complex signals by the
transcriptional promoter. Distinct sequence elements, characteristic chromatin modifications …

Evolution of diverse strategies for promoter regulation

V Brázda, M Bartas, RP Bowater - Trends in Genetics, 2021 - cell.com
DNA is fundamentally important for all cellular organisms due to its role as a store of
hereditary genetic information. The precise and accurate regulation of gene transcription …

Rapid Evolution of cis-Regulatory Sequences via Local Point Mutations

JR Stone, GA Wray - Molecular biology and evolution, 2001 - academic.oup.com
Although the evolution of protein-coding sequences within genomes is well understood, the
same cannot be said of the cis-regulatory regions that control transcription. Yet, changes in …

Comparative genomics of gene regulation—conservation and divergence of cis-regulatory information

ACA Meireles-Filho, A Stark - Current opinion in genetics & development, 2009 - Elsevier
We recently witnessed a tremendous increase in genomics studies on gene regulation and
in entirely sequenced genomes from closely related species. This has triggered analyses …

Comparative studies of gene expression and the evolution of gene regulation

IG Romero, I Ruvinsky, Y Gilad - Nature Reviews Genetics, 2012 - nature.com
The hypothesis that differences in gene regulation have an important role in speciation and
adaptation is more than 40 years old. With the advent of new sequencing technologies, we …

Evaluating the role of natural selection in the evolution of gene regulation

JC Fay, PJ Wittkopp - Heredity, 2008 - nature.com
Surveys of gene expression reveal extensive variability both within and between a wide
range of species. Compelling cases have been made for adaptive changes in gene …

Resurrecting the role of transcription factor change in developmental evolution

VJ Lynch, GP Wagner - Evolution, 2008 - academic.oup.com
A long-standing question in evolutionary and developmental biology concerns the relative
contribution of cis-regulatory and protein changes to developmental evolution. Central to this …