Phylogenomic analyses highlight innovation and introgression in the continental radiations of Fagaceae across the Northern Hemisphere

BF Zhou, S Yuan, AA Crowl, YY Liang, Y Shi… - Nature …, 2022 - nature.com
Northern Hemisphere forests changed drastically in the early Eocene with the diversification
of the oak family (Fagaceae). Cooling climates over the next 20 million years fostered the …

Genomic landscape of the global oak phylogeny

AL Hipp, PS Manos, M Hahn, M Avishai… - New …, 2020 - Wiley Online Library
The tree of life is highly reticulate, with the history of population divergence emerging from
populations of gene phylogenies that reflect histories of introgression, lineage sorting and …

Bridging the micro‐and macroevolutionary levels in phylogenomics: Hyb‐Seq solves relationships from populations to species and above

T Villaverde, L Pokorny, S Olsson… - New …, 2018 - Wiley Online Library
Reconstructing phylogenetic relationships at the micro‐and macroevoutionary levels within
the same tree is problematic because of the need to use different data types and analytical …

The historical biogeography of Fagaceae: tracking the tertiary history of temperate and subtropical forests of the Northern Hemisphere

PS Manos, AM Stanford - International Journal of Plant …, 2001 - journals.uchicago.edu
The angiosperm family Fagaceae is a central element of several distinct community types
throughout the Northern Hemisphere and a prime candidate for modern biogeographic …

Sympatric parallel diversification of major oak clades in the Americas and the origins of Mexican species diversity

AL Hipp, PS Manos, A González‐Rodríguez… - New …, 2018 - Wiley Online Library
Summary Oaks (Quercus, Fagaceae) are the dominant tree genus of North America in
species number and biomass, and Mexico is a global center of oak diversity. Understanding …

Repeated upslope biome shifts in Saxifraga during late-Cenozoic climate cooling

T Carruthers, MS Moerland, J Ebersbach… - Nature …, 2024 - nature.com
Mountains are among the most biodiverse places on Earth, and plant lineages that inhabit
them have some of the highest speciation rates ever recorded. Plant diversity within the …

Massive postglacial gene flow between European white oaks uncovered genes underlying species barriers

T Leroy, Q Rougemont, JL Dupouey… - New …, 2020 - Wiley Online Library
Oaks are dominant forest tree species widely distributed across the Northern Hemisphere,
where they constitute natural resources of economic, ecological, social and historical value …

A time and a place for everything: phylogenetic history and geography as joint predictors of oak plastome phylogeny

KK Pham, AL Hipp, PS Manos, RC Cronn - Genome, 2017 - cdnsciencepub.com
Owing to high rates of introgressive hybridization, the plastid genome is poorly suited to fine-
scale DNA barcoding and phylogenetic studies of the oak genus (Quercus, Fagaceae). At …

Pleistocene glacial cycles drive isolation, gene flow and speciation in the high‐elevation Andes

B Nevado, N Contreras‐Ortiz, C Hughes… - New …, 2018 - Wiley Online Library
Mountain ranges are amongst the most species‐rich habitats, with many large and rapid
evolutionary radiations. The tempo and mode of diversification in these systems are key …

A framework phylogeny of the American oak clade based on sequenced RAD data

AL Hipp, DAR Eaton, J Cavender-Bares, E Fitzek… - PloS one, 2014 - journals.plos.org
Previous phylogenetic studies in oaks (Quercus, Fagaceae) have failed to resolve the
backbone topology of the genus with strong support. Here, we utilize next-generation …