Optimizing genomic-enabled prediction in small-scale maize hybrid breeding programs: a roadmap review

R Fritsche-Neto, G Galli, KLR Borges… - Frontiers in Plant …, 2021 - frontiersin.org
The usefulness of genomic prediction (GP) for many animal and plant breeding programs
has been highlighted for many studies in the last 20 years. In maize breeding programs …

[HTML][HTML] Comparison of sequencing-based and array-based genotyping platforms for genomic prediction of maize hybrid performance

G Yu, Y Cui, Y Jiao, K Zhou, X Wang, W Yang, Y Xu… - The Crop Journal, 2023 - Elsevier
Genomic selection (GS) is a powerful tool for improving genetic gain in maize breeding.
However, its routine application in large-scale breeding pipelines is limited by the high cost …

Beyond Genomic Prediction: Combining Different Types of omics Data Can Improve Prediction of Hybrid Performance in Maize

TA Schrag, M Westhues, W Schipprack, F Seifert… - Genetics, 2018 - academic.oup.com
The ability to predict the agronomic performance of single-crosses with high precision is
essential for selecting superior candidates for hybrid breeding. With recent technological …

Genomewide prediction of tropical maize single-crosses

MP Mendes, CL de Souza Jr - Euphytica, 2016 - Springer
Genomic selection studies usually use few environmental models to predict progenies from
biparental crosses. However, in a maize breeding program, numerous crosses need to be …

Genome-based prediction of maize hybrid performance across genetic groups, testers, locations, and years

T Albrecht, HJ Auinger, V Wimmer, JO Ogutu… - Theoretical and applied …, 2014 - Springer
Key message The calibration data for genomic prediction should represent the full genetic
spectrum of a breeding program. Data heterogeneity is minimized by connecting data …

Novel strategies for genomic prediction of untested single-cross maize hybrids using unbalanced historical data

KOG Dias, HP Piepho, LJM Guimarães… - Theoretical and Applied …, 2020 - Springer
Key message Weighted outperformed unweighted genomic prediction using an unbalanced
dataset representative of a commercial breeding program. Moreover, the use of the two …

Genomic prediction applied to multiple traits and environments in second season maize hybrids

AA de Oliveira, MFR Resende Jr, LFV Ferrão… - Heredity, 2020 - nature.com
Genomic selection has become a reality in plant breeding programs with the reduction in
genotyping costs. Especially in maize breeding programs, it emerges as a promising tool for …

Improvement of predictive ability in maize hybrids by including dominance effects and marker× environment models

LFV Ferrão, CD Marinho, PR Munoz… - Crop …, 2020 - Wiley Online Library
Hybrid breeding programs are driven by the potential to explore the heterosis phenomenon
in traits with nonadditive inheritance. Traditionally, progress has been achieved by crossing …

Predictive breeding for maize: Making use of molecular phenotypes, machine learning, and physiological crop models

JD Washburn, MB Burch, JAV Franco - Crop Science, 2020 - Wiley Online Library
Maize (Zea mays L.) has been a focus of scientific research and breeding for over a century.
It is also one of the most economically important crops in the world, with a value of …

Effect of trait heritability, training population size and marker density on genomic prediction accuracy estimation in 22 bi-parental tropical maize populations

A Zhang, H Wang, Y Beyene, K Semagn… - Frontiers in Plant …, 2017 - frontiersin.org
Genomic selection is being used increasingly in plant breeding to accelerate genetic gain
per unit time. One of the most important applications of genomic selection in maize breeding …