Improved discovery of genetic interactions using CRISPRiSeq across multiple environments

M Jaffe, A Dziulko, JD Smith, RPS Onge… - Genome …, 2019 - genome.cshlp.org
Large-scale genetic interaction (GI) screens in yeast have been invaluable for our
understanding of molecular systems biology and for characterizing novel gene function …

[HTML][HTML] Yeast genetic interaction screens in the age of CRISPR/Cas

NR Adames, JE Gallegos, J Peccoud - Current genetics, 2019 - Springer
The ease of performing both forward and reverse genetics in Saccharomyces cerevisiae,
along with its stable haploid state and short generation times, has made this budding yeast …

iSeq: a new double-barcode method for detecting dynamic genetic interactions in yeast

M Jaffe, G Sherlock, SF Levy - G3: Genes, Genomes, Genetics, 2017 - academic.oup.com
Systematic screens for genetic interactions are a cornerstone of both network and systems
biology. However, most screens have been limited to characterizing interaction networks in …

DRYGIN: a database of quantitative genetic interaction networks in yeast

JLY Koh, H Ding, M Costanzo… - Nucleic acids …, 2010 - academic.oup.com
Genetic interactions are highly informative for deciphering the underlying functional
principles that govern how genes control cell processes. Recent developments in Synthetic …

[HTML][HTML] Differential analysis of high-throughput quantitative genetic interaction data

GJ Bean, T Ideker - Genome biology, 2012 - Springer
Synthetic genetic arrays have been very effective at measuring genetic interactions in yeast
in a high-throughput manner and recently have been expanded to measure quantitative …

TheCellMap. org: a web-accessible database for visualizing and mining the global yeast genetic interaction network

M Usaj, Y Tan, W Wang, B VanderSluis… - G3: Genes, genomes …, 2017 - academic.oup.com
Providing access to quantitative genomic data is key to ensure large-scale data validation
and promote new discoveries. TheCellMap. org serves as a central repository for storing and …

[HTML][HTML] A high-resolution gene expression atlas of epistasis between gene-specific transcription factors exposes potential mechanisms for genetic interactions

K Sameith, S Amini, MJA Groot Koerkamp… - BMC biology, 2015 - Springer
Background Genetic interactions, or non-additive effects between genes, play a crucial role
in many cellular processes and disease. Which mechanisms underlie these genetic …

Environmental robustness of the global yeast genetic interaction network

M Costanzo, J Hou, V Messier, J Nelson, M Rahman… - Science, 2021 - science.org
INTRODUCTION Genetic interactions are identified when variants in different genes
combine to generate an unusual phenotype compared with the expected combined effect of …

A network of human functional gene interactions from knockout fitness screens in cancer cells

E Kim, M Dede, WF Lenoir, G Wang… - Life science …, 2019 - life-science-alliance.org
Genetic interactions mediate the emergence of phenotype from genotype. The systematic
survey of genetic interactions in yeast showed that genes operating in the same biological …

Deep Mutational Scanning of Protein–Protein Interactions Between Partners Expressed from Their Endogenous Loci In Vivo

AK Dubé, R Dandage, S Dibyachintan… - … Genomics: Methods and …, 2022 - Springer
Deep mutational scanning (DMS) generates mutants of a protein of interest in a
comprehensive manner. CRISPR-Cas9 technology enables large-scale genome editing …