Total-evidence dating under the fossilized birth–death process

C Zhang, T Stadler, S Klopfstein, TA Heath… - Systematic …, 2016 - academic.oup.com
Bayesian total-evidence dating involves the simultaneous analysis of morphological data
from the fossil record and morphological and sequence data from recent organisms, and it …

A total-evidence approach to dating with fossils, applied to the early radiation of the Hymenoptera

F Ronquist, S Klopfstein, L Vilhelmsen… - Systematic …, 2012 - academic.oup.com
Phylogenies are usually dated by calibrating interior nodes against the fossil record. This
relies on indirect methods that, in the worst case, misrepresent the fossil information. Here …

Integrating fossil observations into phylogenetics using the fossilized birth–death model

AM Wright, DW Bapst, J Barido-Sottani… - Annual Review of …, 2022 - annualreviews.org
Over the past decade, a new set of methods for estimating dated trees has emerged.
Originally referred to as the fossilized birth–death (FBD) process, this single model has …

Ignoring stratigraphic age uncertainty leads to erroneous estimates of species divergence times under the fossilized birth–death process

J Barido-Sottani… - … of the Royal …, 2019 - royalsocietypublishing.org
Fossil information is essential for estimating species divergence times, and can be
integrated into Bayesian phylogenetic inference using the fossilized birth–death (FBD) …

Bayesian estimation of speciation and extinction from incomplete fossil occurrence data

D Silvestro, J Schnitzler, LH Liow, A Antonelli… - Systematic …, 2014 - academic.oup.com
The temporal dynamics of species diversity are shaped by variations in the rates of
speciation and extinction, and there is a long history of inferring these rates using first and …

The fossilized birth–death process for coherent calibration of divergence-time estimates

TA Heath, JP Huelsenbeck… - Proceedings of the …, 2014 - National Acad Sciences
Time-calibrated species phylogenies are critical for addressing a wide range of questions in
evolutionary biology, such as those that elucidate historical biogeography or uncover …

The impact of the representation of fossil calibrations on Bayesian estimation of species divergence times

J Inoue, PCJ Donoghue, Z Yang - Systematic biology, 2010 - academic.oup.com
Bayesian inference provides a powerful framework for integrating different sources of
information (in particular, molecules and fossils) to derive estimates of species divergence …

A simulation-based evaluation of tip-dating under the fossilized birth–death process

A Luo, DA Duchêne, C Zhang, CD Zhu… - Systematic …, 2020 - academic.oup.com
Bayesian molecular dating is widely used to study evolutionary timescales. This procedure
usually involves phylogenetic analysis of nucleotide sequence data, with fossil-based …

Bayesian molecular dating: opening up the black box

L Bromham, S Duchêne, X Hua, AM Ritchie… - Biological …, 2018 - Wiley Online Library
Molecular dating analyses allow evolutionary timescales to be estimated from genetic data,
offering an unprecedented capacity for investigating the evolutionary past of all species …

Improved estimation of macroevolutionary rates from fossil data using a Bayesian framework

D Silvestro, N Salamin, A Antonelli, X Meyer - Paleobiology, 2019 - cambridge.org
The estimation of origination and extinction rates and their temporal variation is central to
understanding diversity patterns and the evolutionary history of clades. The fossil record …