Electrostatic interactions in biological DNA-related systems

AG Cherstvy - Physical Chemistry Chemical Physics, 2011 - pubs.rsc.org
In this perspective article, we focus on recent developments in the theory of charge effects in
biological DNA-related systems. The electrostatic effects on different levels of DNA …

Positively charged surfaces increase the flexibility of DNA

A Podestà, M Indrieri, D Brogioli, GS Manning… - Biophysical journal, 2005 - cell.com
Many proteins" bind" DNA through positively charged amino acids on their surfaces.
However, to overcome significant energetic and topological obstacles, proteins that bend or …

Complexes of semiflexible polyelectrolytes and charged spheres as models for salt-modulated nucleosomal structures

KK Kunze, RR Netz - Physical Review E, 2002 - APS
We investigate the complexation behavior between a semiflexible charged polymer and an
oppositely charged sphere with parameters appropriate for the DNA-histone system. We …

[引用][C] Electrostatic correlations fold DNA

MO Khan, B Jönsson - Biopolymers: Original Research on …, 1999 - Wiley Online Library
Electrostatic interactions have important effects on the physical properties of
macromolecules. 1, 2 The DNA molecule is a case of special interest where many …

Microscopics of complexation between long DNA molecules and positively charged colloids

K Keren, Y Soen, GB Yoseph, R Gilad, E Braun… - Physical review …, 2002 - APS
Extensive atomic force and electron microscopy reveal a new, generic DNA-colloid complex
with a fixed number of DNA bases per colloid. The fiber shaped complex is stable in the …

Electrostatic mechanisms of DNA deformation

LD Williams, LJ Maher III - Annual review of biophysics and …, 2000 - annualreviews.org
▪ Abstract The genomes of higher cells consist of double-helical DNA, a densely charged
polyelectrolyte of immense length. The intrinsic physical properties of DNA, as well as the …

DNA–DNA interactions in tight supercoils are described by a small effective charge density

C Maffeo, R Schöpflin, H Brutzer, R Stehr… - Physical review …, 2010 - APS
DNA-DNA interactions are important for genome compaction and transcription regulation. In
studies of such complex processes, DNA is often modeled as a homogeneously charged …

[HTML][HTML] Physicochemical analysis of electrostatic foundation for DNA–protein interactions in chromatin transformations

N Korolev, OV Vorontsova, L Nordenskiöld - Progress in biophysics and …, 2007 - Elsevier
Electrostatic interactions between DNA and DNA-packaging proteins, the histones,
contribute substantially to stability of eukaryotic chromatin on all levels of its organization …

Binding of DNA to zwitterionic lipid layers mediated by divalent cations

DH Mengistu, K Bohinc, S May - The Journal of Physical Chemistry …, 2009 - ACS Publications
Divalent cations, ie, calcium, magnesium, and others, are able to enhance the ability of DNA
to interact with membranes that are composed of zwitterionic lipids such as …

[PDF][PDF] DNA-inspired electrostatics

WM Gelbart, RF Bruinsma, PA Pincus… - Physics today, 2000 - researchgate.net
U:“physiological” conditions (a 0.1 molar solution of NaCl), a DNA molecule takes on the
form of a disordered coil with a radius of gyration of several micrometers; if any lengths of the …