Monitoring environmental microbiomes: Alignment of microbiology and computational biology competencies within a culturally integrated curriculum and research …

JS Lee, JL Lowell, K Whitewater… - Molecular Ecology …, 2023 - Wiley Online Library
We have developed a flexible undergraduate curriculum that leverages the place‐based
research of environmental microbiomes to increase the number of Indigenous researchers …

PUMAA: a platform for accessible microbiome analysis in the undergraduate classroom

K Mitchell, J Ronas, C Dao, AC Freise… - Frontiers in …, 2020 - frontiersin.org
Improvements in high-throughput sequencing makes targeted amplicon analysis an ideal
method for the study of human and environmental microbiomes by undergraduates. Multiple …

Mainstreaming microbes across biomes

LJ Clarke, PJ Jones, H Ammitzboll, LA Barmuta… - …, 2020 - academic.oup.com
Bacteria, fungi, and other microorganisms in the environment (ie, environmental
microbiomes) provide vital ecosystem services and affect human health. Despite their …

Teaching microbiome analysis: From design to computation through inquiry

GL Rosen, P Hammrich - Frontiers in microbiology, 2020 - frontiersin.org
In this article, we present our three-class course sequence to educate students about
microbiome analysis and metagenomics through experiential learning by taking them from …

An assessment of US microbiome research

E Stulberg, D Fravel, LM Proctor, DM Murray… - Nature …, 2016 - nature.com
Genome-enabled technologies have supported a dramatic increase in our ability to study
microbial communities in environments and hosts. Taking stock of previously funded …

A culturally responsive curricular revision to improve engagement and learning in an undergraduate microbiology lab course

KS Fuller, C Torres Rivera - Frontiers in microbiology, 2021 - frontiersin.org
We seek to increase student engagement and success to subsequently lead to increased
retention and degree attainment for students at our Hispanic-serving institution. We …

Unique down to our microbes—assessment of an inquiry-based metagenomics activity

TB Lentz, LE Ott, SD Robertson… - … of Microbiology & …, 2017 - Am Soc Microbiol
Metagenomics is an important method for studying microbial life. However, undergraduate
exposure to metagenomics is hindered by associated software, computing demands, and …

Strategies for building computing skills to support microbiome analysis: a five-year perspective from the EDAMAME workshop

A Shade, TK Dunivin, J Choi, TK Teal, AC Howe - Msystems, 2019 - Am Soc Microbiol
Here, we report our educational approach and learner evaluations of the first 5 years of the
Explorations in Data Analysis for Metagenomic Advances in Microbial Ecology (EDAMAME) …

[PDF][PDF] Participatory microbiome research with hmong and Karen communities: lessons learned

P Vangay, N Yang, S Pergament… - Journal of …, 2021 - jprm.scholasticahq.com
In this brief report, we share lessons learned from the Immigrant Microbiome Project (IMP), a
microbiome research study conducted in partnership with the Hmong and Karen …

Symbiosis in the soil: citizen microbiology in middle and high school classrooms

E McKenney, T Flythe, C Millis, J Stalls… - … of Microbiology & …, 2016 - Am Soc Microbiol
Microorganisms are vital to environmental health, yet their association with disease often
overshadows these benefits. Building citizen-science activities around the positive role of …