A robust methodology for assessing differential homeolog contributions to the transcriptomes of allopolyploids

JL Boatwright, LM McIntyre, AM Morse, S Chen… - Genetics, 2018 - academic.oup.com
Polyploidy has played a pivotal and recurring role in angiosperm evolution. Allotetraploids
arise from hybridization between species and possess duplicated gene copies (homeologs) …

Genomic legacies of the progenitors and the evolutionary consequences of allopolyploidy

KA Steige, T Slotte - Current opinion in plant biology, 2016 - Elsevier
Highlights•Genomic legacies of the ancestors may affect duplicate gene evolution in
allopolyploids.•Duplicate gene loss in allopolyploids is often distinctly non …

Genomewide nonadditive gene regulation in Arabidopsis allotetraploids

J Wang, L Tian, HS Lee, NE Wei, H Jiang, B Watson… - Genetics, 2006 - academic.oup.com
Polyploidy has occurred throughout the evolutionary history of all eukaryotes and is
extremely common in plants. Reunification of the evolutionarily divergent genomes in …

Investigation of regulatory divergence between homoeologs in the recently formed allopolyploids, Tragopogon mirus and T. miscellus (Asteraceae)

MJ Yoo, J Koh, JL Boatwright, DE Soltis… - The Plant …, 2024 - Wiley Online Library
Polyploidy is an important evolutionary process throughout eukaryotes, particularly in
flowering plants. Duplicated gene pairs (homoeologs) in allopolyploids provide additional …

Genomic expression dominance in allopolyploids

RA Rapp, JA Udall, JF Wendel - BMC biology, 2009 - Springer
Background Allopolyploid speciation requires rapid evolutionary reconciliation of two
diverged genomes and gene regulatory networks. Here we describe global patterns of gene …

Next‐generation sequencing and genome evolution in allopolyploids

RJA Buggs, S Renny‐Byfield, M Chester… - American Journal of …, 2012 - Wiley Online Library
• Premise of the study: Hybridization and polyploidization (allopolyploidy) are ubiquitous in
the evolution of plants, but tracing the origins and subsequent evolution of the constituent …

Trajectories of Homoeolog-Specific Expression in Allotetraploid Tragopogon castellanus Populations of Independent Origins

JL Boatwright, CT Yeh, HC Hu, A Susanna… - Frontiers in Plant …, 2021 - frontiersin.org
Polyploidization can have a significant ecological and evolutionary impact by providing
substantially more genetic material that may result in novel phenotypes upon which …

Subgenome assignment in allopolyploids: challenges and future directions

PP Edger, MR McKain, KA Bird, R VanBuren - Current opinion in plant …, 2018 - Elsevier
Highlights•Many recent and ancient allopolyploids exhibit subgenome
dominance.•Extensive homoeologous exchanges complicate accurate subgenome …

Global patterns of subgenome evolution in organelle-targeted genes of six allotetraploid angiosperms

J Sharbrough, JL Conover… - Molecular Biology …, 2022 - academic.oup.com
Whole-genome duplications (WGDs) are a prominent process of diversification in
eukaryotes. The genetic and evolutionary forces that WGD imposes on cytoplasmic …

The legacy of diploid progenitors in allopolyploid gene expression patterns

RJA Buggs, JF Wendel, JJ Doyle… - … of the Royal …, 2014 - royalsocietypublishing.org
Allopolyploidization (hybridization and whole-genome duplication) is a common
phenomenon in plant evolution with immediate saltational effects on genome structure and …