A robust methodology for assessing differential homeolog contributions to the transcriptomes of allopolyploids
Polyploidy has played a pivotal and recurring role in angiosperm evolution. Allotetraploids
arise from hybridization between species and possess duplicated gene copies (homeologs) …
arise from hybridization between species and possess duplicated gene copies (homeologs) …
Genomic legacies of the progenitors and the evolutionary consequences of allopolyploidy
Highlights•Genomic legacies of the ancestors may affect duplicate gene evolution in
allopolyploids.•Duplicate gene loss in allopolyploids is often distinctly non …
allopolyploids.•Duplicate gene loss in allopolyploids is often distinctly non …
Genomewide nonadditive gene regulation in Arabidopsis allotetraploids
J Wang, L Tian, HS Lee, NE Wei, H Jiang, B Watson… - Genetics, 2006 - academic.oup.com
Polyploidy has occurred throughout the evolutionary history of all eukaryotes and is
extremely common in plants. Reunification of the evolutionarily divergent genomes in …
extremely common in plants. Reunification of the evolutionarily divergent genomes in …
Investigation of regulatory divergence between homoeologs in the recently formed allopolyploids, Tragopogon mirus and T. miscellus (Asteraceae)
Polyploidy is an important evolutionary process throughout eukaryotes, particularly in
flowering plants. Duplicated gene pairs (homoeologs) in allopolyploids provide additional …
flowering plants. Duplicated gene pairs (homoeologs) in allopolyploids provide additional …
Genomic expression dominance in allopolyploids
Background Allopolyploid speciation requires rapid evolutionary reconciliation of two
diverged genomes and gene regulatory networks. Here we describe global patterns of gene …
diverged genomes and gene regulatory networks. Here we describe global patterns of gene …
Next‐generation sequencing and genome evolution in allopolyploids
• Premise of the study: Hybridization and polyploidization (allopolyploidy) are ubiquitous in
the evolution of plants, but tracing the origins and subsequent evolution of the constituent …
the evolution of plants, but tracing the origins and subsequent evolution of the constituent …
Trajectories of Homoeolog-Specific Expression in Allotetraploid Tragopogon castellanus Populations of Independent Origins
Polyploidization can have a significant ecological and evolutionary impact by providing
substantially more genetic material that may result in novel phenotypes upon which …
substantially more genetic material that may result in novel phenotypes upon which …
Subgenome assignment in allopolyploids: challenges and future directions
Highlights•Many recent and ancient allopolyploids exhibit subgenome
dominance.•Extensive homoeologous exchanges complicate accurate subgenome …
dominance.•Extensive homoeologous exchanges complicate accurate subgenome …
Global patterns of subgenome evolution in organelle-targeted genes of six allotetraploid angiosperms
J Sharbrough, JL Conover… - Molecular Biology …, 2022 - academic.oup.com
Whole-genome duplications (WGDs) are a prominent process of diversification in
eukaryotes. The genetic and evolutionary forces that WGD imposes on cytoplasmic …
eukaryotes. The genetic and evolutionary forces that WGD imposes on cytoplasmic …
The legacy of diploid progenitors in allopolyploid gene expression patterns
Allopolyploidization (hybridization and whole-genome duplication) is a common
phenomenon in plant evolution with immediate saltational effects on genome structure and …
phenomenon in plant evolution with immediate saltational effects on genome structure and …