Highly effective sequencing whole chloroplast genomes of angiosperms by nine novel universal primer pairs

JB Yang, DZ Li, HT Li - Molecular ecology resources, 2014 - Wiley Online Library
Chloroplast genomes supply indispensable information that helps improve the phylogenetic
resolution and even as organelle‐scale barcodes. Next‐generation sequencing …

[HTML][HTML] Assembly of chloroplast genomes with long- and short-read data: a comparison of approaches using Eucalyptus pauciflora as a test case

W Wang, M Schalamun, A Morales-Suarez, D Kainer… - BMC genomics, 2018 - Springer
Background Chloroplasts are organelles that conduct photosynthesis in plant and algal
cells. The information chloroplast genome contained is widely used in agriculture and …

[HTML][HTML] Whole genome sequencing of enriched chloroplast DNA using the Illumina GAII platform

RA Atherton, BJ McComish, LD Shepherd, LA Berry… - Plant methods, 2010 - Springer
Background Complete chloroplast genome sequences provide a valuable source of
molecular markers for studies in molecular ecology and evolution of plants. To obtain …

An update on chloroplast genomes

V Ravi, JP Khurana, AK Tyagi, P Khurana - Plant systematics and …, 2008 - Springer
Plant cells possess two more genomes besides the central nuclear genome: the
mitochondrial genome and the chloroplast genome (or plastome). Compared to the gigantic …

[HTML][HTML] A systematic comparison of chloroplast genome assembly tools

JA Freudenthal, S Pfaff, N Terhoeven, A Korte… - Genome Biology, 2020 - Springer
Background Chloroplasts are intracellular organelles that enable plants to conduct
photosynthesis. They arose through the symbiotic integration of a prokaryotic cell into an …

[HTML][HTML] A database of PCR primers for the chloroplast genomes of higher plants

B Heinze - Plant methods, 2007 - Springer
Background Chloroplast genomes evolve slowly and many primers for PCR amplification
and analysis of chloroplast sequences can be used across a wide array of genera. In some …

[HTML][HTML] Chloroplast Genomes of Two Species of Cypripedium: Expanded Genome Size and Proliferation of AT-Biased Repeat Sequences

YY Guo, JX Yang, HK Li, HS Zhao - Frontiers in Plant Science, 2021 - frontiersin.org
The size of the chloroplast genome (plastome) of autotrophic angiosperms is generally
conserved. However, the chloroplast genomes of some lineages are greatly expanded …

[HTML][HTML] Highly variable chloroplast markers for evaluating plant phylogeny at low taxonomic levels and for DNA barcoding

W Dong, J Liu, J Yu, L Wang, S Zhou - PloS one, 2012 - journals.plos.org
Background At present, plant molecular systematics and DNA barcoding techniques rely
heavily on the use of chloroplast gene sequences. Because of the relatively low evolutionary …

[HTML][HTML] An improved chloroplast DNA extraction procedure for whole plastid genome sequencing

C Shi, N Hu, H Huang, J Gao, YJ Zhao, LZ Gao - Plos one, 2012 - journals.plos.org
Background Chloroplast genomes supply valuable genetic information for evolutionary and
functional studies in plants. The past five years have witnessed a dramatic increase in the …

Sequencing angiosperm plastid genomes made easy: a complete set of universal primers and a case study on the phylogeny of Saxifragales

W Dong, C Xu, T Cheng, K Lin… - Genome biology and …, 2013 - academic.oup.com
Plastid genomes are an invaluable resource for plant biological studies. However, the
number of completely sequenced plant plastid genomes is still small compared with the vast …