Highly effective sequencing whole chloroplast genomes of angiosperms by nine novel universal primer pairs
JB Yang, DZ Li, HT Li - Molecular ecology resources, 2014 - Wiley Online Library
Chloroplast genomes supply indispensable information that helps improve the phylogenetic
resolution and even as organelle‐scale barcodes. Next‐generation sequencing …
resolution and even as organelle‐scale barcodes. Next‐generation sequencing …
[HTML][HTML] Assembly of chloroplast genomes with long- and short-read data: a comparison of approaches using Eucalyptus pauciflora as a test case
Background Chloroplasts are organelles that conduct photosynthesis in plant and algal
cells. The information chloroplast genome contained is widely used in agriculture and …
cells. The information chloroplast genome contained is widely used in agriculture and …
[HTML][HTML] Whole genome sequencing of enriched chloroplast DNA using the Illumina GAII platform
RA Atherton, BJ McComish, LD Shepherd, LA Berry… - Plant methods, 2010 - Springer
Background Complete chloroplast genome sequences provide a valuable source of
molecular markers for studies in molecular ecology and evolution of plants. To obtain …
molecular markers for studies in molecular ecology and evolution of plants. To obtain …
An update on chloroplast genomes
Plant cells possess two more genomes besides the central nuclear genome: the
mitochondrial genome and the chloroplast genome (or plastome). Compared to the gigantic …
mitochondrial genome and the chloroplast genome (or plastome). Compared to the gigantic …
[HTML][HTML] A systematic comparison of chloroplast genome assembly tools
JA Freudenthal, S Pfaff, N Terhoeven, A Korte… - Genome Biology, 2020 - Springer
Background Chloroplasts are intracellular organelles that enable plants to conduct
photosynthesis. They arose through the symbiotic integration of a prokaryotic cell into an …
photosynthesis. They arose through the symbiotic integration of a prokaryotic cell into an …
[HTML][HTML] A database of PCR primers for the chloroplast genomes of higher plants
B Heinze - Plant methods, 2007 - Springer
Background Chloroplast genomes evolve slowly and many primers for PCR amplification
and analysis of chloroplast sequences can be used across a wide array of genera. In some …
and analysis of chloroplast sequences can be used across a wide array of genera. In some …
[HTML][HTML] Chloroplast Genomes of Two Species of Cypripedium: Expanded Genome Size and Proliferation of AT-Biased Repeat Sequences
YY Guo, JX Yang, HK Li, HS Zhao - Frontiers in Plant Science, 2021 - frontiersin.org
The size of the chloroplast genome (plastome) of autotrophic angiosperms is generally
conserved. However, the chloroplast genomes of some lineages are greatly expanded …
conserved. However, the chloroplast genomes of some lineages are greatly expanded …
[HTML][HTML] Highly variable chloroplast markers for evaluating plant phylogeny at low taxonomic levels and for DNA barcoding
W Dong, J Liu, J Yu, L Wang, S Zhou - PloS one, 2012 - journals.plos.org
Background At present, plant molecular systematics and DNA barcoding techniques rely
heavily on the use of chloroplast gene sequences. Because of the relatively low evolutionary …
heavily on the use of chloroplast gene sequences. Because of the relatively low evolutionary …
[HTML][HTML] An improved chloroplast DNA extraction procedure for whole plastid genome sequencing
Background Chloroplast genomes supply valuable genetic information for evolutionary and
functional studies in plants. The past five years have witnessed a dramatic increase in the …
functional studies in plants. The past five years have witnessed a dramatic increase in the …
Sequencing angiosperm plastid genomes made easy: a complete set of universal primers and a case study on the phylogeny of Saxifragales
Plastid genomes are an invaluable resource for plant biological studies. However, the
number of completely sequenced plant plastid genomes is still small compared with the vast …
number of completely sequenced plant plastid genomes is still small compared with the vast …