Towards standardizing taxonomic ranks using divergence times – a case study for reconstruction of the Agaricus taxonomic system

RL Zhao, JL Zhou, J Chen, S Margaritescu… - Fungal diversity, 2016 - Springer
The recognition of taxonomic ranks in the Linnean classification system is largely arbitrary.
Some authors have proposed the use of divergence time as a universally standardized …

The ranking of fungi: a tribute to David L. Hawksworth on his 70th birthday

KD Hyde, SSN Maharachchikumbura, S Hongsanan… - Fungal diversity, 2017 - Springer
The history of assigning ranks to fungi, as well as the relative importance of using
divergence time estimates is reviewed. The paper pays tribute to the major mycological …

Phylogenetic relationships of agaric fungi based on nuclear large subunit ribosomal DNA sequences

JM Moncalvo, FM Lutzoni, SA Rehner… - Systematic …, 2000 - academic.oup.com
Phylogenetic relationships of mushrooms and their relatives within the order Agaricales
were addressed by using nuclear large subunit ribosomal DNA sequences. Approximately …

A compendium of generic names of agarics and Agaricales

J Kalichman, PM Kirk, PB Matheny - Taxon, 2020 - Wiley Online Library
Agarics (gilled mushrooms) and the order Agaricales include some of the best‐known and
most charismatic fungi. However, neither group has had its constituent genera exhaustively …

High-level classification of the Fungi and a tool for evolutionary ecological analyses

L Tedersoo, S Sánchez-Ramírez, U Koljalg, M Bahram… - Fungal diversity, 2018 - Springer
High-throughput sequencing studies generate vast amounts of taxonomic data. Evolutionary
ecological hypotheses of the recovered taxa and Species Hypotheses are difficult to test due …

Towards genomic criteria for delineating fungal species

C Gostinčar - Journal of Fungi, 2020 - mdpi.com
The discussion of fungal species delineation has yet to reach a consensus, despite the
advancements in technology, which helped modernise traditional approaches. In particular …

The largest type study of Agaricales species to date: bringing identification and nomenclature of Phlegmacium (Cortinarius) into the DNA era

K Liimatainen, T Niskanen, B Dima… - … and Evolution of …, 2014 - ingentaconnect.com
Cortinarius is a species-rich and morphologically challenging genus with a cosmopolitan
distribution. Many names have not been used consistently and in some instances the same …

Improving phylogenetic inference of mushrooms with RPB1 and RPB2 nucleotide sequences (Inocybe; Agaricales)

PB Matheny - Molecular phylogenetics and evolution, 2005 - Elsevier
Approximately 3000 bp across 84 taxa have been analyzed for variable regions of RPB1,
RPB2, and nLSU-rDNA to infer phylogenetic relationships in the large ectomycorrhizal …

Taming the beast: a revised classification of Cortinariaceae based on genomic data

K Liimatainen, JT Kim, L Pokorny, PM Kirk, B Dentinger… - Fungal Diversity, 2022 - Springer
Family Cortinariaceae currently includes only one genus, Cortinarius, which is the largest
Agaricales genus, with thousands of species worldwide. The species are important …

Ranking higher taxa using divergence times: a case study in Dothideomycetes

JK Liu, KD Hyde, R Jeewon, AJL Phillips… - Fungal Diversity, 2017 - Springer
The current classification system for the recognition of taxonomic ranks among fungi,
especially at high-ranking level, is subjective. With the development of molecular …