Multiplexed precision genome editing with trackable genomic barcodes in yeast

KR Roy, JD Smith, SC Vonesch, G Lin, CS Tu… - Nature …, 2018 - nature.com
Our understanding of how genotype controls phenotype is limited by the scale at which we
can precisely alter the genome and assess the phenotypic consequences of each …

[HTML][HTML] Functional genetic variants revealed by massively parallel precise genome editing

E Sharon, SAA Chen, NM Khosla, JD Smith… - Cell, 2018 - cell.com
A major challenge in genetics is to identify genetic variants driving natural phenotypic
variation. However, current methods of genetic mapping have limited resolution. To address …

Genome-scale engineering of Saccharomyces cerevisiae with single-nucleotide precision

Z Bao, M HamediRad, P Xue, H Xiao, I Tasan… - Nature …, 2018 - nature.com
We developed a CRISPR–Cas9-and homology-directed-repair-assisted genome-scale
engineering method named CHAnGE that can rapidly output tens of thousands of specific …

Genome-wide mapping of mutations at single-nucleotide resolution for protein, metabolic and genome engineering

AD Garst, MC Bassalo, G Pines, SA Lynch… - Nature …, 2017 - nature.com
Improvements in DNA synthesis and sequencing have underpinned comprehensive
assessment of gene function in bacteria and eukaryotes. Genome-wide analyses require …

[HTML][HTML] Wildtype heterogeneity contributes to clonal variability in genome edited cells

L Westermann, Y Li, B Göcmen, M Niedermoser… - Scientific reports, 2022 - nature.com
Genome editing tools such as CRISPR/Cas9 enable the rapid and precise manipulation of
genomes. CRISPR-based genome editing has greatly simplified the study of gene function …

Whole-organism lineage tracing by combinatorial and cumulative genome editing

A McKenna, GM Findlay, JA Gagnon, MS Horwitz… - Science, 2016 - science.org
INTRODUCTION The developmental path by which a fertilized egg gives rise to the cells of a
multicellular organism is termed the cell lineage. In 1983, John Sulston and colleagues …

Single-step precision genome editing in yeast using CRISPR-Cas9

A Akhmetov, JM Laurent, J Gollihar, EC Gardner… - Bio …, 2018 - bio-protocol.org
Genome modification in budding yeast has been extremely successful largely due to its
highly efficient homology-directed DNA repair machinery. Several methods for modifying the …

CRISPResso2 provides accurate and rapid genome editing sequence analysis

K Clement, H Rees, MC Canver, JM Gehrke… - Nature …, 2019 - nature.com
To the Editor—The field of genome editing is advancing rapidly1, most recently exemplified
by the advent of base editors that enable changing single nucleotides in a predictable …

CrispRVariants charts the mutation spectrum of genome engineering experiments

H Lindsay, A Burger, B Biyong, A Felker, C Hess… - Nature …, 2016 - nature.com
CRISPR-Cas9 and related technologies enable the efficient alteration of genomic DNA at
targeted positions and are widely used in applications ranging from individual gene …

Genome editing systems across yeast species

Z Yang, M Blenner - Current opinion in biotechnology, 2020 - Elsevier
Yeasts are used to produce a myriad of value-added compounds. Engineering yeasts into
cost-efficient cell factories is greatly facilitated by the availability of genome editing tools …