Patterns, mechanisms, and consequences of homoeologous exchange in allopolyploid angiosperms: a genomic and epigenomic perspective

SK Deb, PP Edger, JC Pires, MR McKain - New Phytologist, 2023 - Wiley Online Library
Allopolyploids result from hybridization between different evolutionary lineages coupled with
genome doubling. Homoeologous chromosomes (chromosomes with common shared …

[HTML][HTML] Homoeologous exchanges, segmental allopolyploidy, and polyploid genome evolution

AS Mason, JF Wendel - Frontiers in Genetics, 2020 - frontiersin.org
Polyploidy is a major force in plant evolution and speciation. In newly formed allopolyploids,
pairing between related chromosomes from different subgenomes (homoeologous …

Homoeolog expression bias and expression level dominance in allopolyploids

CE Grover, JP Gallagher, EP Szadkowski, MJ Yoo… - New Phytologist, 2012 - JSTOR
Polyploidy is now recognized as a characteristic feature of all angiosperm genomes (Jiao et
al., 2011), and remains an important speciation process today (Wendel, 2000; Comai, 2005; …

Cistrans controls and regulatory novelty accompanying allopolyploidization

G Hu, JF Wendel - New Phytologist, 2019 - Wiley Online Library
Allopolyploidy is a prevalent process in plants, having important physiological, ecological
and evolutionary consequences. Transcriptomic responses to genomic merger and doubling …

Homoeologous exchanges cause extensive dosage‐dependent gene expression changes in an allopolyploid crop

A Lloyd, A Blary, D Charif, C Charpentier… - New …, 2018 - Wiley Online Library
Structural variation is a major source of genetic diversity and an important substrate for
selection. In allopolyploids, homoeologous exchanges (ie between the constituent …

Impact of transposable elements on the organization and function of allopolyploid genomes

C Parisod, K Alix, J Just, M Petit, V Sarilar… - New …, 2010 - Wiley Online Library
Transposable elements (TEs) represent an important fraction of plant genomes and are
likely to play a pivotal role in fuelling genome reorganization and functional changes …

Evolutionary consequences of autopolyploidy

C Parisod, R Holderegger, C Brochmann - New phytologist, 2010 - Wiley Online Library
Autopolyploidy is more common in plants than traditionally assumed, but has received little
attention compared with allopolyploidy. Hence, the advantages and disadvantages of …

The causes and molecular consequences of polyploidy in flowering plants

GD Moghe, SH Shiu - Annals of the New York Academy of …, 2014 - Wiley Online Library
Polyploidy is an important force shaping plant genomes. All flowering plants are
descendants of an ancestral polyploid species, and up to 70% of extant vascular plant …

Advances in the study of polyploidy since Plant speciation

DE Soltis, PS Soltis, JA Tate - New phytologist, 2004 - Wiley Online Library
Enormous strides have been made in the study of polyploidy over the last 20 yr. Here, we
highlight some of these discoveries and note where our understanding of polyploid …

Allopolyploidization Lays the Foundation for Evolution of Distinct Populations: Evidence From Analysis of Synthetic Arabidopsis Allohexaploids

SC Matsushita, AP Tyagi, GM Thornton, JC Pires… - Genetics, 2012 - academic.oup.com
Polyploidization is an important mechanism for introducing diversity into a population and
promoting evolutionary change. It is believed that most, if not all, angiosperms have …