Patterns of microsatellite distribution across eukaryotic genomes
Abstract Background Microsatellites, or Simple Sequence Repeats (SSRs), are short tandem
repeats of 1–6 nt motifs present in all genomes. Emerging evidence points to their role in …
repeats of 1–6 nt motifs present in all genomes. Emerging evidence points to their role in …
Next generation sequencing and FISH reveal uneven and nonrandom microsatellite distribution in two grasshopper genomes
Simple sequence repeats (SSRs), also known as microsatellites, are one of the prominent
DNA sequences shaping the repeated fraction of eukaryotic genomes. In spite of their …
DNA sequences shaping the repeated fraction of eukaryotic genomes. In spite of their …
The rise, fall and renaissance of microsatellites in eukaryotic genomes
E Buschiazzo, NJ Gemmell - Bioessays, 2006 - Wiley Online Library
Microsatellites are among the most versatile of genetic markers, being used in an impressive
number of biological applications. However, the evolutionary dynamics of these markers …
number of biological applications. However, the evolutionary dynamics of these markers …
Survey of microsatellite clustering in eight fully sequenced species sheds light on the origin of compound microsatellites
R Kofler, C Schlötterer, E Luschützky, T Lelley - BMC genomics, 2008 - Springer
Background Compound microsatellites are a special variation of microsatellites in which two
or more individual microsatellites are found directly adjacent to each other. Until now, such …
or more individual microsatellites are found directly adjacent to each other. Until now, such …
SSRome: an integrated database and pipelines for exploring microsatellites in all organisms
MM Mokhtar, MAM Atia - Nucleic Acids Research, 2019 - academic.oup.com
Over the past decade, many databases focusing on microsatellite mining on a genomic
scale were released online with at least one of the following major deficiencies:(i) lacking …
scale were released online with at least one of the following major deficiencies:(i) lacking …
Microsatellites in different eukaryotic genomes: survey and analysis
We examined the abundance of microsatellites with repeated unit lengths of 1–6 base pairs
in several eukaryotic taxonomic groups: primates, rodents, other mammals, nonmammalian …
in several eukaryotic taxonomic groups: primates, rodents, other mammals, nonmammalian …
Microsatellites: genomic distribution, putative functions and mutational mechanisms: a review
Microsatellites, or tandem simple sequence repeats (SSR), are abundant across genomes
and show high levels of polymorphism. SSR genetic and evolutionary mechanisms remain …
and show high levels of polymorphism. SSR genetic and evolutionary mechanisms remain …
Large-scale analysis reveals that the genome features of simple sequence repeats are generally conserved at the family level in insects
S Ding, S Wang, K He, M Jiang, F Li - BMC genomics, 2017 - Springer
Background Simple sequence repeats (SSR), also called microsatellites, have been widely
used as genetic markers, and have been extensively studied in some model insects. At …
used as genetic markers, and have been extensively studied in some model insects. At …
Breakdown of phylogenetic signal: a survey of microsatellite densities in 454 shotgun sequences from 154 non model eukaryote species
E Meglecz, G Neve, E Biffin, MG Gardner - PLoS One, 2012 - journals.plos.org
Microsatellites are ubiquitous in Eukaryotic genomes. A more complete understanding of
their origin and spread can be gained from a comparison of their distribution within a …
their origin and spread can be gained from a comparison of their distribution within a …
Genome-wide analysis of microsatellite repeats in humans: their abundance and density in specific genomic regions
S Subramanian, RK Mishra, L Singh - Genome biology, 2003 - Springer
Abstract Background Simple sequence repeats (SSRs) are found in most organisms, and
occupy about 3% of the human genome. Although it is becoming clear that such repeats are …
occupy about 3% of the human genome. Although it is becoming clear that such repeats are …