Patterns of microsatellite distribution across eukaryotic genomes

S Srivastava, AK Avvaru, DT Sowpati, RK Mishra - BMC genomics, 2019 - Springer
Abstract Background Microsatellites, or Simple Sequence Repeats (SSRs), are short tandem
repeats of 1–6 nt motifs present in all genomes. Emerging evidence points to their role in …

Next generation sequencing and FISH reveal uneven and nonrandom microsatellite distribution in two grasshopper genomes

FJ Ruiz-Ruano, Á Cuadrado, EE Montiel… - Chromosoma, 2015 - Springer
Simple sequence repeats (SSRs), also known as microsatellites, are one of the prominent
DNA sequences shaping the repeated fraction of eukaryotic genomes. In spite of their …

The rise, fall and renaissance of microsatellites in eukaryotic genomes

E Buschiazzo, NJ Gemmell - Bioessays, 2006 - Wiley Online Library
Microsatellites are among the most versatile of genetic markers, being used in an impressive
number of biological applications. However, the evolutionary dynamics of these markers …

Survey of microsatellite clustering in eight fully sequenced species sheds light on the origin of compound microsatellites

R Kofler, C Schlötterer, E Luschützky, T Lelley - BMC genomics, 2008 - Springer
Background Compound microsatellites are a special variation of microsatellites in which two
or more individual microsatellites are found directly adjacent to each other. Until now, such …

SSRome: an integrated database and pipelines for exploring microsatellites in all organisms

MM Mokhtar, MAM Atia - Nucleic Acids Research, 2019 - academic.oup.com
Over the past decade, many databases focusing on microsatellite mining on a genomic
scale were released online with at least one of the following major deficiencies:(i) lacking …

Microsatellites in different eukaryotic genomes: survey and analysis

G Tóth, Z Gáspári, J Jurka - Genome research, 2000 - genome.cshlp.org
We examined the abundance of microsatellites with repeated unit lengths of 1–6 base pairs
in several eukaryotic taxonomic groups: primates, rodents, other mammals, nonmammalian …

Microsatellites: genomic distribution, putative functions and mutational mechanisms: a review

YC Li, AB Korol, T Fahima, A Beiles… - Molecular ecology, 2002 - Wiley Online Library
Microsatellites, or tandem simple sequence repeats (SSR), are abundant across genomes
and show high levels of polymorphism. SSR genetic and evolutionary mechanisms remain …

Large-scale analysis reveals that the genome features of simple sequence repeats are generally conserved at the family level in insects

S Ding, S Wang, K He, M Jiang, F Li - BMC genomics, 2017 - Springer
Background Simple sequence repeats (SSR), also called microsatellites, have been widely
used as genetic markers, and have been extensively studied in some model insects. At …

Breakdown of phylogenetic signal: a survey of microsatellite densities in 454 shotgun sequences from 154 non model eukaryote species

E Meglecz, G Neve, E Biffin, MG Gardner - PLoS One, 2012 - journals.plos.org
Microsatellites are ubiquitous in Eukaryotic genomes. A more complete understanding of
their origin and spread can be gained from a comparison of their distribution within a …

Genome-wide analysis of microsatellite repeats in humans: their abundance and density in specific genomic regions

S Subramanian, RK Mishra, L Singh - Genome biology, 2003 - Springer
Abstract Background Simple sequence repeats (SSRs) are found in most organisms, and
occupy about 3% of the human genome. Although it is becoming clear that such repeats are …