[HTML][HTML] Plant genomic resources at National Genomics Data Center: assisting in data-driven breeding applications

D Tian, T Xu, H Kang, H Luo, Y Wang, M Chen, R Li… - aBIOTECH, 2024 - Springer
Genomic data serve as an invaluable resource for unraveling the intricacies of the higher
plant systems, including the constituent elements within and among species. Through …

[HTML][HTML] Beyond NGS data sharing for plant ecological resilience and improvement of agronomic traits

JS Kwon, J Shilpha, J Lee, SI Yeom - Scientific Data, 2024 - nature.com
Decoding complex plant omics is essential for advancing our understanding of plant biology,
evolution, and breeding as well as for practical applications in agriculture, conservation, and …

Plant Omics Data Center: an integrated web repository for interspecies gene expression networks with NLP-based curation

H Ohyanagi, T Takano, S Terashima… - Plant and Cell …, 2015 - academic.oup.com
Comprehensive integration of large-scale omics resources such as genomes,
transcriptomes and metabolomes will provide deeper insights into broader aspects of …

Unlimited thirst for genome sequencing, data interpretation, and database usage in genomic era: The road towards fast‐track crop plant improvement

AP Dhanapal, M Govindaraj - Genetics research international, 2015 - Wiley Online Library
The number of sequenced crop genomes and associated genomic resources is growing
rapidly with the advent of inexpensive next generation sequencing methods. Databases …

[PDF][PDF] Database Resources in BIG Data Center: submission, archiving, and integration of big data in plant science

S Song, Z Zhang - Molecular Plant, 2019 - cell.com
With the rapid advancement of sequencing technologies and the growing volume of omics
data in plants, there is much anticipation in digging out the treasure from such big data and …

[HTML][HTML] PlantTribes2: Tools for comparative gene family analysis in plant genomics

EK Wafula, H Zhang, G Von Kuster… - Frontiers in Plant …, 2023 - frontiersin.org
Plant genome-scale resources are being generated at an increasing rate as sequencing
technologies continue to improve and raw data costs continue to fall; however, the cost of …

Genomics era for plants and crop species—advances made and needed tasks ahead

IY Abdurakhmonov - Plant genomics, 2016 - books.google.com
Historically, unintentional plant selection and subsequent crop domestication, coupled with
the need and desire to get more food and feed products, have resulted in the continuous …

Bioinformatics approach in plant genomic research

Q Ong, P Nguyen, N Phuong Thao, L Le - Current genomics, 2016 - ingentaconnect.com
The advance in genomics technology leads to the dramatic change in plant biology
research. Plant biologists now easily access to enormous genomic data to deeply study …

JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom

A Sreedasyam, C Plott, MS Hossain… - Nucleic acids …, 2023 - academic.oup.com
Gene functional descriptions offer a crucial line of evidence for candidate genes underlying
trait variation. Conversely, plant responses to environmental cues represent important …

[PDF][PDF] A graph-based pan-genome guides biological discovery

Y Tao, DR Jordan, ES Mace - Molecular Plant, 2020 - cell.com
The availability of reference genomes has been the foundation for genomics research in the
last decade. However, as reports of presence/absence variations of sequence and genes …