Self-assembly of promoter DNA and RNA Pol II machinery into transcriptionally active biomolecular condensates

BA Lewis, SK Das, RK Jha, D Levens - Science Advances, 2023 - science.org
Transcription in the nucleus occurs in a concentrated, dense environment, and no
reasonable biochemical facsimile of this milieu exists. Such a biochemical environment …

Biomolecular condensates in the nucleus

BR Sabari, A Dall'Agnese, RA Young - Trends in biochemical sciences, 2020 - cell.com
Nuclear processes such as DNA replication, transcription, and RNA processing each
depend on the concerted action of many different protein and RNA molecules. How …

Functional organization of RNA polymerase II in nuclear subcompartments

K Rippe, A Papantonis - Current Opinion in Cell Biology, 2022 - Elsevier
Distinct clusters of RNA polymerase II are responsible for gene transcription inside
eukaryotic cell nuclei. Despite the functional implications of such subnuclear organization …

Mediator and RNA polymerase II clusters associate in transcription-dependent condensates

WK Cho, JH Spille, M Hecht, C Lee, C Li, V Grube… - Science, 2018 - science.org
Models of gene control have emerged from genetic and biochemical studies, with limited
consideration of the spatial organization and dynamics of key components in living cells. We …

Real-time dynamics of RNA polymerase II clustering in live human cells

II Cisse, I Izeddin, SZ Causse, L Boudarene, A Senecal… - Science, 2013 - science.org
Transcription is reported to be spatially compartmentalized in nuclear transcription factories
with clusters of RNA polymerase II (Pol II). However, little is known about when these foci …

[HTML][HTML] Biomolecular condensates and gene activation in development and disease

BR Sabari - Developmental cell, 2020 - cell.com
Activating the right gene at the right time and place is essential for development. Emerging
evidence suggests that this process is regulated by the mesoscale compartmentalization of …

Transcription factories in the context of the nuclear and genome organization

SV Razin, AA Gavrilov, A Pichugin… - Nucleic acids …, 2011 - academic.oup.com
In the eukaryotic nucleus, genes are transcribed in transcription factories. In the present
review, we re-evaluate the models of transcription factories in the light of recent and older …

RNA in formation and regulation of transcriptional condensates

PA Sharp, AK Chakraborty, JE Henninger, RA Young - Rna, 2022 - rnajournal.cshlp.org
Macroscopic membraneless organelles containing RNA such as the nucleoli, germ
granules, and the Cajal body have been known for decades. These biomolecular …

RNA polymerase II transcription compartments: from multivalent chromatin binding to liquid droplet formation?

K Rippe, A Papantonis - Nature Reviews Molecular Cell Biology, 2021 - nature.com
Recent studies invoke phase separation as a mechanism underlying the formation of
'transcriptional condensates'. However, similarities between transcriptional condensates and …

Assembly of the transcription machinery: ordered and stable, random and dynamic, or both?

TJ Stasevich, JG McNally - Chromosoma, 2011 - Springer
The assembly of the transcription machinery is a key step in gene activation, but even basic
details of this process remain unclear. Here we discuss the apparent discrepancy between …