Interactions in the microbiome: communities of organisms and communities of genes

E Boon, CJ Meehan, C Whidden… - FEMS microbiology …, 2014 - academic.oup.com
A central challenge in microbial community ecology is the delineation of appropriate units of
biodiversity, which can be taxonomic, phylogenetic, or functional in nature. The term …

Defining microbiome function

JL Klassen - Nature microbiology, 2018 - nature.com
Why does a microorganism associate with a host? What function does it perform? Such
questions are difficult to unequivocally address and remain hotly debated. This is partially …

Microbiomes in light of traits: a phylogenetic perspective

JBH Martiny, SE Jones, JT Lennon, AC Martiny - Science, 2015 - science.org
BACKGROUND Microbial communities—microbiomes—are intricately linked to human
health and critical ecosystem services. New technologies allow the rapid characterization of …

[HTML][HTML] Microbiome: focus on causation and mechanism

MA Fischbach - Cell, 2018 - cell.com
There is tremendous enthusiasm for the microbiome in academia and industry. This
Perspective argues that in order to realize its potential, the field needs to focus on …

A developing symbiosis: enabling cross-talk between ecologists and microbiome scientists

L Tipton, JL Darcy, NA Hynson - Frontiers in microbiology, 2019 - frontiersin.org
Like all interactions, the success of cross-discipline collaborations relies on effective
communication. Ecology offers theoretical frameworks and lexicons to study microbiomes …

Unraveling interactions in microbial communities-from co-cultures to microbiomes

J Tan, C Zuniga, K Zengler - Journal of Microbiology, 2015 - Springer
Microorganisms do not exist in isolation in the environment. Instead, they form complex
communities among themselves as well as with their hosts. Different forms of interactions not …

The community-function landscape of microbial consortia

A Sanchez, D Bajic, J Diaz-Colunga, A Skwara… - Cell Systems, 2023 - cell.com
Quantitatively linking the composition and function of microbial communities is a major
aspiration of microbial ecology. Microbial community functions emerge from a complex web …

Rules of engagement: interspecies interactions that regulate microbial communities

AEF Little, CJ Robinson, SB Peterson… - Annu. Rev …, 2008 - annualreviews.org
Microbial communities comprise an interwoven matrix of biological diversity modified by
physical and chemical variation over space and time. Although these communities are the …

The microbiome beyond the horizon of ecological and evolutionary theory

B Koskella, LJ Hall, CJE Metcalf - Nature ecology & evolution, 2017 - nature.com
The ecological and evolutionary study of community formation, diversity, and stability is
rooted in general theory and reinforced by decades of system-specific empirical work …

Metagenomic assessment of the global diversity and distribution of bacteria and fungi

M Bahram, T Netherway, C Frioux… - Environmental …, 2021 - Wiley Online Library
Bacteria and fungi are of uttermost importance in determining environmental and host
functioning. Despite close interactions between animals, plants, their associated …