Direct approach to compute Jacobians for diffuse optical tomography using perturbation Monte Carlo-based photon “replay”

R Yao, X Intes, Q Fang - Biomedical optics express, 2018 - opg.optica.org
Perturbation Monte Carlo (pMC) has been previously proposed to rapidly recompute optical
measurements when small perturbations of optical properties are considered, but it was …

Fast calculation of multipath diffusive reflectance in optical coherence tomography

IT Lima Jr, A Kalra, HE Hernández-Figueroa… - Biomedical optics …, 2012 - opg.optica.org
We show how to efficiently calculate the signal in optical coherence tomography (OCT)
systems due to the ballistic photons, the quasi-ballistic photons, and the photons that …

Improved importance sampling for Monte Carlo simulation of time-domain optical coherence tomography

IT Lima Jr, A Kalra, SS Sherif - Biomedical optics express, 2011 - opg.optica.org
We developed an importance sampling based method that significantly speeds up the
calculation of the diffusive reflectance due to ballistic and to quasi-ballistic components of …

Hierarchical Bayesian regularization of reconstructions for diffuse optical tomography using multiple priors

F Abdelnour, C Genovese, T Huppert - Biomedical optics express, 2010 - opg.optica.org
Diffuse optical tomography (DOT) is a non-invasive brain imaging technique that uses low-
levels of near-infrared light to measure optical absorption changes due to regional blood …

Hierarchical Bayesian estimation improves depth accuracy and spatial resolution of diffuse optical tomography

T Shimokawa, T Kosaka, O Yamashita, N Hiroe… - Optics express, 2012 - opg.optica.org
High-density diffuse optical tomography (HD-DOT) is an emerging technique for visualizing
the internal state of biological tissues. The large number of overlapping measurement …

MCDataset: a public reference dataset of Monte Carlo simulated quantities for multilayered and voxelated tissues computed by massively parallel PyXOpto Python …

M Bürmen, F Pernuš, P Naglič - Journal of Biomedical Optics, 2022 - spiedigitallibrary.org
Significance: Current open-source Monte Carlo (MC) method implementations for light
propagation modeling are many times tedious to build and require third-party licensed …

Hardware acceleration of a Monte Carlo simulation for photodynamic therapy treatment planning

WCY Lo, K Redmond, J Luu, P Chow… - … of biomedical optics, 2009 - spiedigitallibrary.org
Monte Carlo (MC) simulations are being used extensively in the field of medical biophysics,
particularly for modeling light propagation in tissues. The high computation time for MC limits …

Monte Carlo-based data generation for efficient deep learning reconstruction of macroscopic diffuse optical tomography and topography applications

NI Nizam, M Ochoa, JT Smith, S Gao… - Journal of Biomedical …, 2022 - spiedigitallibrary.org
Significance: Deep learning (DL) models are being increasingly developed to map sensor
data to the image domain directly. However, DL methodologies are data-driven and require …

Importance sampling-based Monte Carlo simulation of time-domain optical coherence tomography with embedded objects

V Periyasamy, M Pramanik - Applied optics, 2016 - opg.optica.org
Monte Carlo simulation for light propagation in biological tissue is widely used to study light–
tissue interaction. Simulation for optical coherence tomography (OCT) studies requires …

Hyperspectral wide-field time domain single-pixel diffuse optical tomography platform

Q Pian, R Yao, X Intes - Biomedical Optics Express, 2018 - opg.optica.org
We present the design and comprehensive instrumental characterization of a time domain
diffuse optical tomography (TD-DOT) platform based on wide-field illumination and wide …