Super-pangenome analyses highlight genomic diversity and structural variation across wild and cultivated tomato species
Effective utilization of wild relatives is key to overcoming challenges in genetic improvement
of cultivated tomato, which has a narrow genetic basis; however, current efforts to decipher …
of cultivated tomato, which has a narrow genetic basis; however, current efforts to decipher …
Genomic analyses provide insights into the history of tomato breeding
The histories of crop domestication and breeding are recorded in genomes. Although tomato
is a model species for plant biology and breeding, the nature of human selection that altered …
is a model species for plant biology and breeding, the nature of human selection that altered …
The tomato pan-genome uncovers new genes and a rare allele regulating fruit flavor
Modern tomatoes have narrow genetic diversity limiting their improvement potential. We
present a tomato pan-genome constructed using genome sequences of 725 …
present a tomato pan-genome constructed using genome sequences of 725 …
Genome of Solanum pimpinellifolium provides insights into structural variants during tomato breeding
Solanum pimpinellifolium (SP) is the wild progenitor of cultivated tomato. Because of its
remarkable stress tolerance and intense flavor, SP has been used as an important …
remarkable stress tolerance and intense flavor, SP has been used as an important …
A high-continuity and annotated tomato reference genome
X Su, B Wang, X Geng, Y Du, Q Yang, B Liang, G Meng… - BMC genomics, 2021 - Springer
Background Genetic and functional genomics studies require a high-quality genome
assembly. Tomato (Solanum lycopersicum), an important horticultural crop, is an ideal …
assembly. Tomato (Solanum lycopersicum), an important horticultural crop, is an ideal …
Exploring genetic variation in the tomato (Solanum section Lycopersicon) clade by whole‐genome sequencing
100 Tomato Genome Sequencing Consortium… - The Plant …, 2014 - Wiley Online Library
We explored genetic variation by sequencing a selection of 84 tomato accessions and
related wild species representative of the Lycopersicon, Arcanum, Eriopersicon and …
related wild species representative of the Lycopersicon, Arcanum, Eriopersicon and …
Analysis of wild tomato introgression lines elucidates the genetic basis of transcriptome and metabolome variation underlying fruit traits and pathogen response
Wild tomato species represent a rich gene pool for numerous desirable traits lost during
domestication. Here, we exploited an introgression population representing wild desert …
domestication. Here, we exploited an introgression population representing wild desert …
Diversity in conserved genes in tomato
Background Tomato has excellent genetic and genomic resources including a broad set of
Expressed Sequence Tag (EST) data and high-density genetic maps. In addition, emerging …
Expressed Sequence Tag (EST) data and high-density genetic maps. In addition, emerging …
Comprehensive metabolic profiling and phenotyping of interspecific introgression lines for tomato improvement
N Schauer, Y Semel, U Roessner, A Gur, I Balbo… - Nature …, 2006 - nature.com
Tomato represents an important source of fiber and nutrients in the human diet and is a
central model for the study of fruit biology. To identify components of fruit metabolic …
central model for the study of fruit biology. To identify components of fruit metabolic …
Genomic variation in tomato, from wild ancestors to contemporary breeding accessions
Background Domestication modifies the genomic variation of species. Quantifying this
variation provides insights into the domestication process, facilitates the management of …
variation provides insights into the domestication process, facilitates the management of …