On the linkage of thermodynamics and pathogenicity
This review outlines the effect of disease-causing mutations on proteins' thermodynamics.
Two major thermodynamics quantities, which are essential for structural integrity, the folding …
Two major thermodynamics quantities, which are essential for structural integrity, the folding …
Structural perspective on revealing and altering molecular functions of genetic variants linked with diseases
Structural information of biological macromolecules is crucial and necessary to deliver
predictions about the effects of mutations—whether polymorphic or deleterious (ie, disease …
predictions about the effects of mutations—whether polymorphic or deleterious (ie, disease …
Predicting the effect of single mutations on protein stability and binding with respect to types of mutations
The development of methods and algorithms to predict the effect of mutations on protein
stability, protein–protein interaction, and protein–DNA/RNA binding is necessitated by the …
stability, protein–protein interaction, and protein–DNA/RNA binding is necessitated by the …
ProTherm: thermodynamic database for proteins and mutants
MM Gromiha, J An, H Kono, M Oobatake… - Nucleic acids …, 1999 - academic.oup.com
The first release of the Thermodynamic Database for Proteins and Mutants (ProTherm)
contains more than 3300 data of several thermodynamic parameters for wild type and …
contains more than 3300 data of several thermodynamic parameters for wild type and …
On the physics of thermal-stability changes upon mutations of a protein
It is of great interest from both scientific and practical viewpoints to theoretically predict the
thermal-stability changes upon mutations of a protein. However, such a prediction is an …
thermal-stability changes upon mutations of a protein. However, such a prediction is an …
Lower kinetic limit to protein thermal stability: a proposal regarding protein stability in vivo and its relation with misfolding diseases
IM Plaza del Pino, B Ibarra‐Molero… - Proteins: Structure …, 2000 - Wiley Online Library
In vitro thermal denaturation experiments suggest that, because of the possibility of
irreversible alterations, thermodynamic stability (ie, a positive value for the unfolding Gibbs …
irreversible alterations, thermodynamic stability (ie, a positive value for the unfolding Gibbs …
Decomposition of the free energy of a system in terms of specific interactions: implications for theoretical and experimental studies
AE Mark, WF Van Gunsteren - Journal of molecular biology, 1994 - Elsevier
Recently, a number of methods have been proposed that are designed to extract
contributions to the change in free energy associated with a given perturbation or mutation …
contributions to the change in free energy associated with a given perturbation or mutation …
The linear interaction energy method for the prediction of protein stability changes upon mutation
L Wickstrom, E Gallicchio… - … : Structure, Function, and …, 2012 - Wiley Online Library
The coupling of protein energetics and sequence changes is a critical aspect of
computational protein design, as well as for the understanding of protein evolution, human …
computational protein design, as well as for the understanding of protein evolution, human …
Free energy perturbation calculations of the thermodynamics of protein side-chain mutations
Protein side-chain mutation is fundamental both to natural evolutionary processes and to the
engineering of protein therapeutics, which constitute an increasing fraction of important …
engineering of protein therapeutics, which constitute an increasing fraction of important …
Most monogenic disorders are caused by mutations altering protein folding free energy
Revealing the molecular effect that pathogenic missense mutations have on the
corresponding protein is crucial for developing therapeutic solutions. This is especially …
corresponding protein is crucial for developing therapeutic solutions. This is especially …