Intragenomic variation in the ITS rDNA region obscures phylogenetic relationships and inflates estimates of operational taxonomic units in genus Laetiporus
DL Lindner, MT Banik - Mycologia, 2011 - Taylor & Francis
Regions of rDNA are commonly used to infer phylogenetic relationships among fungal
species and as DNA barcodes for identification. These regions occur in large tandem arrays …
species and as DNA barcodes for identification. These regions occur in large tandem arrays …
Unambiguous identification of fungi: where do we stand and how accurate and precise is fungal DNA barcoding?
True fungi (Fungi) and fungus-like organisms (eg Mycetozoa, Oomycota) constitute the
second largest group of organisms based on global richness estimates, with around 3 …
second largest group of organisms based on global richness estimates, with around 3 …
DNA barcoding of fungal specimens using PacBio long‐read high‐throughput sequencing
Molecular methods are increasingly used to identify species that lack conspicuous macro‐or
micromorphological characters. Taxonomic and ecological research teams barcode large …
micromorphological characters. Taxonomic and ecological research teams barcode large …
Employing 454 amplicon pyrosequencing to reveal intragenomic divergence in the internal transcribed spacer rDNA region in fungi
The rDNA internal transcribed spacer (ITS) region has been accepted as a DNA barcoding
marker for fungi and is widely used in phylogenetic studies; however, intragenomic ITS …
marker for fungi and is widely used in phylogenetic studies; however, intragenomic ITS …
Secondary structure of ITS2 rRNA provides taxonomic characters for systematic studies—a case in Lycoperdaceae (Basidiomycota)
D Krüger, A Gargas - Mycological Research, 2008 - Elsevier
The secondary structure of the ITS2 rDNA transcript (pre-rRNA) could provide information for
identifying homologous nucleotide characters useful for cladistic inference of relationships …
identifying homologous nucleotide characters useful for cladistic inference of relationships …
A preliminary DNA barcode selection for the genus Russula (Russulales, Basidiomycota)
GJ Li, RL Zhao, CL Zhang, F Lin - Mycology, 2019 - Taylor & Francis
Russula is a worldwid genus which has a high species diversity. Aiming accurate and rapid
species identification, candidate genes nLSU (28S), ITS, tef-1α, mtSSU, rpb1, and rpb2 …
species identification, candidate genes nLSU (28S), ITS, tef-1α, mtSSU, rpb1, and rpb2 …
Morphology: still essential in a molecular world
KD Hyde, K Abd-Elsalam, L Cai - Mycotaxon, 2011 - ingentaconnect.com
Morphological characters have long served as the basis for mycological taxonomy. But with
the advent of DNA sequence data, is morphology still useful? Will barcoding replace visual …
the advent of DNA sequence data, is morphology still useful? Will barcoding replace visual …
A phylogenomic analysis of the Ascomycota
B Robbertse, JB Reeves, CL Schoch… - Fungal genetics and …, 2006 - Elsevier
An automated procedure was developed to extract orthologous sequences from fungal
genomes and incorporate them into phylogenomic analyses in a timely and efficient manner …
genomes and incorporate them into phylogenomic analyses in a timely and efficient manner …
New molecular markers for fungal phylogenetics: two genes for species-level systematics in the Sordariomycetes (Ascomycota)
DM Walker, LA Castlebury, AY Rossman… - Molecular Phylogenetics …, 2012 - Elsevier
Although significant progress has been made resolving deep branches of the fungal tree of
life, many fungal systematists are interested in species-level questions to both define …
life, many fungal systematists are interested in species-level questions to both define …
Two independent genetic markers support separation of the myxomycete Lycogala epidendrum into numerous biological species
D Leontyev, M Buttgereit, A Kochergina, O Shchepin… - Mycologia, 2023 - Taylor & Francis
Lycogala epidendrum is one of the most widely known myxomycete species and the first-
ever discovered representative of this group. Using 687 original DNA sequences from 330 …
ever discovered representative of this group. Using 687 original DNA sequences from 330 …