Intragenomic variation in the ITS rDNA region obscures phylogenetic relationships and inflates estimates of operational taxonomic units in genus Laetiporus

DL Lindner, MT Banik - Mycologia, 2011 - Taylor & Francis
Regions of rDNA are commonly used to infer phylogenetic relationships among fungal
species and as DNA barcodes for identification. These regions occur in large tandem arrays …

Unambiguous identification of fungi: where do we stand and how accurate and precise is fungal DNA barcoding?

R Lücking, MC Aime, B Robbertse, AN Miller… - IMA fungus, 2020 - Springer
True fungi (Fungi) and fungus-like organisms (eg Mycetozoa, Oomycota) constitute the
second largest group of organisms based on global richness estimates, with around 3 …

DNA barcoding of fungal specimens using PacBio long‐read high‐throughput sequencing

K Runnel, K Abarenkov, O Copoț… - Molecular Ecology …, 2022 - Wiley Online Library
Molecular methods are increasingly used to identify species that lack conspicuous macro‐or
micromorphological characters. Taxonomic and ecological research teams barcode large …

Employing 454 amplicon pyrosequencing to reveal intragenomic divergence in the internal transcribed spacer rDNA region in fungi

DL Lindner, T Carlsen, R Henrik Nilsson… - Ecology and …, 2013 - Wiley Online Library
The rDNA internal transcribed spacer (ITS) region has been accepted as a DNA barcoding
marker for fungi and is widely used in phylogenetic studies; however, intragenomic ITS …

Secondary structure of ITS2 rRNA provides taxonomic characters for systematic studies—a case in Lycoperdaceae (Basidiomycota)

D Krüger, A Gargas - Mycological Research, 2008 - Elsevier
The secondary structure of the ITS2 rDNA transcript (pre-rRNA) could provide information for
identifying homologous nucleotide characters useful for cladistic inference of relationships …

A preliminary DNA barcode selection for the genus Russula (Russulales, Basidiomycota)

GJ Li, RL Zhao, CL Zhang, F Lin - Mycology, 2019 - Taylor & Francis
Russula is a worldwid genus which has a high species diversity. Aiming accurate and rapid
species identification, candidate genes nLSU (28S), ITS, tef-1α, mtSSU, rpb1, and rpb2 …

Morphology: still essential in a molecular world

KD Hyde, K Abd-Elsalam, L Cai - Mycotaxon, 2011 - ingentaconnect.com
Morphological characters have long served as the basis for mycological taxonomy. But with
the advent of DNA sequence data, is morphology still useful? Will barcoding replace visual …

A phylogenomic analysis of the Ascomycota

B Robbertse, JB Reeves, CL Schoch… - Fungal genetics and …, 2006 - Elsevier
An automated procedure was developed to extract orthologous sequences from fungal
genomes and incorporate them into phylogenomic analyses in a timely and efficient manner …

New molecular markers for fungal phylogenetics: two genes for species-level systematics in the Sordariomycetes (Ascomycota)

DM Walker, LA Castlebury, AY Rossman… - Molecular Phylogenetics …, 2012 - Elsevier
Although significant progress has been made resolving deep branches of the fungal tree of
life, many fungal systematists are interested in species-level questions to both define …

Two independent genetic markers support separation of the myxomycete Lycogala epidendrum into numerous biological species

D Leontyev, M Buttgereit, A Kochergina, O Shchepin… - Mycologia, 2023 - Taylor & Francis
Lycogala epidendrum is one of the most widely known myxomycete species and the first-
ever discovered representative of this group. Using 687 original DNA sequences from 330 …