[HTML][HTML] An integrated meta-omics approach reveals substrates involved in synergistic interactions in a bisphenol A (BPA)-degrading microbial community

K Yu, S Yi, B Li, F Guo, X Peng, Z Wang, Y Wu… - Microbiome, 2019 - Springer
Background Understanding microbial interactions in engineering bioprocesses is important
to enhance and optimize performance outcomes and requires dissection of the multi-layer …

Microbial Community Enhances Biodegradation of Bisphenol A Through Selection of Sphingomonadaceae

S Oh, D Choi - Microbial ecology, 2019 - Springer
Bisphenol A (BPA) is a common ingredient in plastic wares and epoxy resins that are
essential for our daily life. Despite the obvious benefits, BPA may act as an environmental …

[HTML][HTML] Comparative integrated omics: identification of key functionalities in microbial community-wide metabolic networks

H Roume, A Heintz-Buschart, EEL Muller… - npj Biofilms and …, 2015 - nature.com
Background: Mixed microbial communities underpin important biotechnological processes
such as biological wastewater treatment (BWWT). A detailed knowledge of community …

[HTML][HTML] Systems-based approaches to unravel multi-species microbial community functioning

F Abram - Computational and structural biotechnology journal, 2015 - Elsevier
Some of the most transformative discoveries promising to enable the resolution of this
century's grand societal challenges will most likely arise from environmental science and …

Synthetic multispecies microbial communities reveals shifts in secondary metabolism and facilitates cryptic natural product discovery

Y Shi, C Pan, K Wang, X Chen, X Wu… - Environmental …, 2017 - Wiley Online Library
Chemically mediated interactions have been hypothesized to be essential for ecosystem
functioning as co‐occurring organisms can influence the performance of each other by …

[HTML][HTML] Metaproteomics reveals insights into microbial structure, interactions, and dynamic regulation in defined communities as they respond to environmental …

HK Shrestha, MR Appidi, MI Villalobos Solis, J Wang… - BMC microbiology, 2021 - Springer
Background Microbe-microbe interactions between members of the plant rhizosphere are
important but remain poorly understood. A more comprehensive understanding of the …

[HTML][HTML] AMON: annotation of metabolite origins via networks to integrate microbiome and metabolome data

M Shaffer, K Thurimella, K Quinn, K Doenges… - BMC …, 2019 - Springer
Background Untargeted metabolomics of host-associated samples has yielded insights into
mechanisms by which microbes modulate health. However, data interpretation is challenged …

Elucidation of complexity and prediction of interactions in microbial communities

C Zuñiga, L Zaramela, K Zengler - Microbial biotechnology, 2017 - Wiley Online Library
Microorganisms engage in complex interactions with other members of the microbial
community, higher organisms as well as their environment. However, determining the exact …

Interkingdom microbial consortia mechanisms to guide biotechnological applications

S Zhang, N Merino, A Okamoto… - Microbial …, 2018 - Wiley Online Library
Microbial consortia are capable of surviving diverse conditions through the formation of
synergistic population‐level structures, such as stromatolites, microbial mats and biofilms …

[HTML][HTML] Integration of time-series meta-omics data reveals how microbial ecosystems respond to disturbance

M Herold, S Martínez Arbas, S Narayanasamy… - Nature …, 2020 - nature.com
The development of reliable, mixed-culture biotechnological processes hinges on
understanding how microbial ecosystems respond to disturbances. Here we reveal …