[HTML][HTML] Predicting clinical outcome of neuroblastoma patients using an integrative network-based approach

LC Tranchevent, PV Nazarov, T Kaoma, GP Schmartz… - Biology Direct, 2018 - Springer
Background One of the main current challenges in computational biology is to make sense
of the huge amounts of multidimensional experimental data that are being produced. For …

[HTML][HTML] A deep neural network approach to predicting clinical outcomes of neuroblastoma patients

LC Tranchevent, F Azuaje, JC Rajapakse - BMC medical genomics, 2019 - Springer
Background The availability of high-throughput omics datasets from large patient cohorts
has allowed the development of methods that aim at predicting patient clinical outcomes …

[HTML][HTML] Network-based integration of multi-omics data for clinical outcome prediction in neuroblastoma

C Wang, W Lue, R Kaalia, P Kumar, JC Rajapakse - Scientific Reports, 2022 - nature.com
Multi-omics data are increasingly being gathered for investigations of complex diseases
such as cancer. However, high dimensionality, small sample size, and heterogeneity of …

[HTML][HTML] Multi-omics integration for neuroblastoma clinical endpoint prediction

M Francescatto, M Chierici, S Rezvan Dezfooli… - Biology direct, 2018 - Springer
Background High-throughput methodologies such as microarrays and next-generation
sequencing are routinely used in cancer research, generating complex data at different …

[HTML][HTML] Integration of molecular features with clinical information for predicting outcomes for neuroblastoma patients

Y Han, X Ye, C Wang, Y Liu, S Zhang, W Feng… - Biology Direct, 2019 - Springer
Background Neuroblastoma is one of the most common types of pediatric cancer. In current
neuroblastoma prognosis, patients can be stratified into high-and low-risk groups. Generally …

[PDF][PDF] The multilayer community structure of medulloblastoma

I Núñez-Carpintero, M Petrizzelli, A Zinovyev, D Cirillo… - Iscience, 2021 - cell.com
Multilayer networks allow interpreting the molecular basis of diseases, which is particularly
challenging in rare diseases where the number of cases is small compared with the size of …

[HTML][HTML] Integrative analysis based on survival associated co-expression gene modules for predicting Neuroblastoma patients' survival time

Y Han, X Ye, J Cheng, S Zhang, W Feng, Z Han… - Biology direct, 2019 - Springer
Background More than 90% of neuroblastoma patients are cured in the low-risk group while
only less than 50% for those with high-risk disease can be cured. Since the high-risk …

[HTML][HTML] Network modeling identifies patient-specific pathways in glioblastoma

N Tuncbag, P Milani, JL Pokorny, H Johnson, TT Sio… - Scientific reports, 2016 - nature.com
Glioblastoma is the most aggressive type of malignant human brain tumor. Molecular
profiling experiments have revealed that these tumors are extremely heterogeneous. This …

[HTML][HTML] Computational identification of gene networks as a biomarker of neuroblastoma risk

L Sun, L Jiang, CN Grant, HG Wang, C Gragnoli, Z Liu… - Cancers, 2020 - mdpi.com
Neuroblastoma is a common cancer in children, affected by a number of genes that interact
with each other through intricate but coordinated networks. Traditional approaches can only …

[HTML][HTML] Integrating multi-platform genomic data using hierarchical Bayesian relevance vector machines

S Srivastava, W Wang, G Manyam, C Ordonez… - EURASIP Journal on …, 2013 - Springer
Background Recent advances in genome technologies and the subsequent collection of
genomic information at various molecular resolutions hold promise to accelerate the …