Cis-Regulatory Divergence in Gene Expression between Two Thermally Divergent Yeast Species

XC Li, JC Fay - Genome biology and evolution, 2017 - academic.oup.com
Gene regulation is a ubiquitous mechanism by which organisms respond to their
environment. While organisms are often found to be adapted to the environments they …

Joint effects of genes underlying a temperature specialization tradeoff in yeast

F AlZaben, JN Chuong, MB Abrams, RB Brem - PLoS Genetics, 2021 - journals.plos.org
A central goal of evolutionary genetics is to understand, at the molecular level, how
organisms adapt to their environments. For a given trait, the answer often involves the …

Transient genotype-by-environment interactions following environmental shock provide a source of expression variation for essential genes

KH Eng, DJ Kvitek, S Keleş, AP Gasch - Genetics, 2010 - academic.oup.com
Understanding complex genotype-by-environment interactions (GEIs) is crucial for
understanding phenotypic variation. An important factor often overlooked in GEI studies is …

Genome-wide scan reveals that genetic variation for transcriptional plasticity in yeast is biased towards multi-copy and dispensable genes

CR Landry, J Oh, DL Hartl, D Cavalieri - Gene, 2006 - Elsevier
One of the most important aspects of the evolution of development and physiology is the
interplay between gene expression and the environment, by which traits become altered in …

The loci of environmental adaptation in a model eukaryote

P Chen, J Zhang - Nature Communications, 2024 - nature.com
While the underlying genetic changes have been uncovered in some cases of adaptive
evolution, the lack of a systematic study prevents a general understanding of the genomic …

Evolution at two levels of gene expression in yeast

CG Artieri, HB Fraser - Genome research, 2014 - genome.cshlp.org
Despite the greater functional importance of protein levels, our knowledge of gene
expression evolution is based almost entirely on studies of mRNA levels. In contrast, our …

Population Genomics and Transcriptional Consequences of Regulatory Motif Variation in Globally Diverse Saccharomyces cerevisiae Strains

CF Connelly, DA Skelly, MJ Dunham… - Molecular biology and …, 2013 - academic.oup.com
Noncoding genetic variation is known to significantly influence gene expression levels in a
growing number of specific cases; however, the patterns of genome-wide noncoding …

Population and comparative genetics of thermotolerance divergence between yeast species

MB Abrams, CA Dubin, F AlZaben, J Bravo, PM Joubert… - G3, 2021 - academic.oup.com
Many familiar traits in the natural world—from lions' manes to the longevity of bristlecone
pine trees—arose in the distant past, and have long since fixed in their respective species. A …

[PDF][PDF] Evolutionary dynamics of regulatory changes underlying gene expression divergence among Saccharomyces species

BPH Metzger, PJ Wittkopp… - Genome Biology and …, 2017 - academic.oup.com
Heritable changes in gene expression are important contributors to phenotypic differences
within and between species and are caused by mutations in cis-regulatory elements and …

Comparative gene expression between two yeast species

Y Guan, MJ Dunham, OG Troyanskaya, AA Caudy - BMC genomics, 2013 - Springer
Background Comparative genomics brings insight into sequence evolution, but even more
may be learned by coupling sequence analyses with experimental tests of gene function …