A universal probe set for targeted sequencing of 353 nuclear genes from any flowering plant designed using k-medoids clustering
Sequencing of target-enriched libraries is an efficient and cost-effective method for obtaining
DNA sequence data from hundreds of nuclear loci for phylogeny reconstruction. Much of the …
DNA sequence data from hundreds of nuclear loci for phylogeny reconstruction. Much of the …
MarkerMiner 1.0: A new application for phylogenetic marker development using angiosperm transcriptomes
Premise of the study: Targeted sequencing using next‐generation sequencing (NGS)
platforms offers enormous potential for plant systematics by enabling economical acquisition …
platforms offers enormous potential for plant systematics by enabling economical acquisition …
Factors affecting targeted sequencing of 353 nuclear genes from herbarium specimens spanning the diversity of angiosperms
The world's herbaria collectively house millions of diverse plant specimens, including
endangered or extinct species and type specimens. Unlocking genetic data from the …
endangered or extinct species and type specimens. Unlocking genetic data from the …
New targets acquired: Improving locus recovery from the Angiosperms353 probe set
PREMISE Universal target enrichment kits maximize utility across wide evolutionary breadth
while minimizing the number of baits required to create a cost‐efficient kit. The …
while minimizing the number of baits required to create a cost‐efficient kit. The …
Leafing through the genomes of our major crop plants: strategies for capturing unique information
AH Paterson - Nature Reviews Genetics, 2006 - nature.com
Crop plants not only have economic significance, but also comprise important botanical
models for evolution and development. This is reflected by the recent increase in the …
models for evolution and development. This is reflected by the recent increase in the …
Targeted enrichment strategies for next‐generation plant biology
• Premise of the study: The dramatic advances offered by modern DNA sequencers continue
to redefine the limits of what can be accomplished in comparative plant biology. Even with …
to redefine the limits of what can be accomplished in comparative plant biology. Even with …
[PDF][PDF] Phylogenomic insights into deep phylogeny of angiosperms based on broad nuclear gene sampling
L Yang, D Su, X Chang, CSP Foster, L Sun… - Plant …, 2020 - cell.com
Angiosperms (flowering plants) are the most diverse and species-rich group of plants. The
vast majority (∼ 99.95%) of angiosperms form a clade called Mesangiospermae, which is …
vast majority (∼ 99.95%) of angiosperms form a clade called Mesangiospermae, which is …
Targeted sequence capture as a powerful tool for evolutionary analysis1
Next‐generation sequencing technologies (NGS) have revolutionized biological research by
significantly increasing data generation while simultaneously decreasing the time to data …
significantly increasing data generation while simultaneously decreasing the time to data …
The potential of genomics in plant systematics
Next‐generation sequencing (NGS) has revolutionized molecular systematics as well as
population and conservation genetics. It is now possible to obtain enormous amounts of …
population and conservation genetics. It is now possible to obtain enormous amounts of …
Easy353: a tool to get Angiosperms353 genes for phylogenomic research
The Angiosperms353 gene set (AGS) consists of a set of 353 universal low-copy nuclear
genes that were selected by examining more than 600 angiosperm species. These genes …
genes that were selected by examining more than 600 angiosperm species. These genes …
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