A universal probe set for targeted sequencing of 353 nuclear genes from any flowering plant designed using k-medoids clustering

MG Johnson, L Pokorny, S Dodsworth… - Systematic …, 2019 - academic.oup.com
Sequencing of target-enriched libraries is an efficient and cost-effective method for obtaining
DNA sequence data from hundreds of nuclear loci for phylogeny reconstruction. Much of the …

MarkerMiner 1.0: A new application for phylogenetic marker development using angiosperm transcriptomes

S Chamala, N García, GT Godden… - Applications in plant …, 2015 - Wiley Online Library
Premise of the study: Targeted sequencing using next‐generation sequencing (NGS)
platforms offers enormous potential for plant systematics by enabling economical acquisition …

Factors affecting targeted sequencing of 353 nuclear genes from herbarium specimens spanning the diversity of angiosperms

GE Brewer, JJ Clarkson, O Maurin, AR Zuntini… - Frontiers in plant …, 2019 - frontiersin.org
The world's herbaria collectively house millions of diverse plant specimens, including
endangered or extinct species and type specimens. Unlocking genetic data from the …

New targets acquired: Improving locus recovery from the Angiosperms353 probe set

TGB McLay, JL Birch, BF Gunn, W Ning… - Applications in plant …, 2021 - Wiley Online Library
PREMISE Universal target enrichment kits maximize utility across wide evolutionary breadth
while minimizing the number of baits required to create a cost‐efficient kit. The …

Leafing through the genomes of our major crop plants: strategies for capturing unique information

AH Paterson - Nature Reviews Genetics, 2006 - nature.com
Crop plants not only have economic significance, but also comprise important botanical
models for evolution and development. This is reflected by the recent increase in the …

Targeted enrichment strategies for next‐generation plant biology

R Cronn, BJ Knaus, A Liston… - American journal of …, 2012 - Wiley Online Library
• Premise of the study: The dramatic advances offered by modern DNA sequencers continue
to redefine the limits of what can be accomplished in comparative plant biology. Even with …

[PDF][PDF] Phylogenomic insights into deep phylogeny of angiosperms based on broad nuclear gene sampling

L Yang, D Su, X Chang, CSP Foster, L Sun… - Plant …, 2020 - cell.com
Angiosperms (flowering plants) are the most diverse and species-rich group of plants. The
vast majority (∼ 99.95%) of angiosperms form a clade called Mesangiospermae, which is …

Targeted sequence capture as a powerful tool for evolutionary analysis1

CE Grover, A Salmon, JF Wendel - American journal of botany, 2012 - Wiley Online Library
Next‐generation sequencing technologies (NGS) have revolutionized biological research by
significantly increasing data generation while simultaneously decreasing the time to data …

The potential of genomics in plant systematics

DE Soltis, MA Gitzendanner, G Stull, M Chester… - Taxon, 2013 - Wiley Online Library
Next‐generation sequencing (NGS) has revolutionized molecular systematics as well as
population and conservation genetics. It is now possible to obtain enormous amounts of …

Easy353: a tool to get Angiosperms353 genes for phylogenomic research

Z Zhang, P Xie, Y Guo, W Zhou, E Liu… - Molecular Biology and …, 2022 - academic.oup.com
The Angiosperms353 gene set (AGS) consists of a set of 353 universal low-copy nuclear
genes that were selected by examining more than 600 angiosperm species. These genes …