Dissecting the genetic and metabolic mechanisms of adaptation to the knockout of a major metabolic enzyme in Escherichia coli
Unraveling the mechanisms of microbial adaptive evolution following genetic or
environmental challenges is of fundamental interest in biological science and engineering …
environmental challenges is of fundamental interest in biological science and engineering …
Multiple optimal phenotypes overcome redox and glycolytic intermediate metabolite imbalances in Escherichia coli pgi knockout evolutions
D McCloskey, S Xu, TE Sandberg, E Brunk… - Applied and …, 2018 - Am Soc Microbiol
ABSTRACT A mechanistic understanding of how new phenotypes develop to overcome the
loss of a gene product provides valuable insight on both the metabolic and regulatory …
loss of a gene product provides valuable insight on both the metabolic and regulatory …
[HTML][HTML] Latent pathway activation and increased pathway capacity enable Escherichia coli adaptation to loss of key metabolic enzymes
The ability of biological systems to adapt to genetic and environmental perturbations is a
fundamental but poorly understood process at the molecular level. By quantifying metabolic …
fundamental but poorly understood process at the molecular level. By quantifying metabolic …
[HTML][HTML] Global metabolic network reorganization by adaptive mutations allows fast growth of Escherichia coli on glycerol
Comparative whole-genome sequencing enables the identification of specific mutations
during adaptation of bacteria to new environments and allelic replacement can establish …
during adaptation of bacteria to new environments and allelic replacement can establish …
[HTML][HTML] Genetic Basis of Growth Adaptation of Escherichia coli after Deletion of pgi, a Major Metabolic Gene
P Charusanti, TM Conrad, EM Knight… - PLoS …, 2010 - journals.plos.org
Bacterial survival requires adaptation to different environmental perturbations such as
exposure to antibiotics, changes in temperature or oxygen levels, DNA damage, and …
exposure to antibiotics, changes in temperature or oxygen levels, DNA damage, and …
Fast growth phenotype of E. coli K-12 from adaptive laboratory evolution does not require intracellular flux rewiring
Adaptive laboratory evolution (ALE) is a widely-used method for improving the fitness of
microorganisms in selected environmental conditions. It has been applied previously to …
microorganisms in selected environmental conditions. It has been applied previously to …
[HTML][HTML] Growth Adaptation of gnd and sdhCB Escherichia coli Deletion Strains Diverges From a Similar Initial Perturbation of the Transcriptome
D McCloskey, S Xu, TE Sandberg, E Brunk… - Frontiers in …, 2018 - frontiersin.org
Adaptive laboratory evolution (ALE) has emerged as a new approach with which to pursue
fundamental biological inquiries and, in particular, new insights into the systemic function of …
fundamental biological inquiries and, in particular, new insights into the systemic function of …
How adaptive evolution reshapes metabolism to improve fitness: recent advances and future outlook
CP Long, MR Antoniewicz - Current opinion in chemical engineering, 2018 - Elsevier
Highlights•Adaptive laboratory evolution (ALE) is a powerful tool in basic research and strain
development.•ALE studies are most informative when fitness improvement are elucidated by …
development.•ALE studies are most informative when fitness improvement are elucidated by …
[HTML][HTML] Metabolic Erosion Primarily Through Mutation Accumulation, and Not Tradeoffs, Drives Limited Evolution of Substrate Specificity in Escherichia coli
Evolutionary adaptation to a constant environment is often accompanied by specialization
and a reduction of fitness in other environments. We assayed the ability of the Lenski …
and a reduction of fitness in other environments. We assayed the ability of the Lenski …
Distinct transcriptional regulation of the two Escherichia coli transhydrogenases PntAB and UdhA
BRB Haverkorn van Rijsewijk… - …, 2016 - microbiologyresearch.org
Transhydrogenases catalyse interconversion of the redox cofactors NADH and NADPH,
thereby conveying metabolic flexibility to balance catabolic NADPH formation with anabolic …
thereby conveying metabolic flexibility to balance catabolic NADPH formation with anabolic …