[HTML][HTML] Genome mining methods to discover bioactive natural products

KD Bauman, KS Butler, BS Moore… - Natural Product …, 2021 - pubs.rsc.org
Covering: 2016 to 2021 With genetic information available for hundreds of thousands of
organisms in publicly accessible databases, scientists have an unprecedented opportunity …

The confluence of big data and evolutionary genome mining for the discovery of natural products

MG Chevrette, A Gavrilidou, S Mantri… - Natural product …, 2021 - pubs.rsc.org
This review covers literature between 2003–2021 The development and application of
genome mining tools has given rise to ever-growing genetic and chemical databases and …

[HTML][HTML] Mining and unearthing hidden biosynthetic potential

K Scherlach, C Hertweck - Nature Communications, 2021 - nature.com
Genetically encoded small molecules (secondary metabolites) play eminent roles in
ecological interactions, as pathogenicity factors and as drug leads. Yet, these chemical …

Natural product discovery through microbial genome mining

E Kenshole, M Herisse, M Michael, SJ Pidot - Current Opinion in Chemical …, 2021 - Elsevier
The advent of the genomic era has opened up enormous possibilities for the discovery of
new natural products. Also known as specialized metabolites, these compounds produced …

Genetic platforms for heterologous expression of microbial natural products

JJ Zhang, X Tang, BS Moore - Natural product reports, 2019 - pubs.rsc.org
Covering: 2005 up to 2019 Natural products are of paramount importance in human
medicine. Not only are most antibacterial and anticancer drugs derived directly from or …

A computational framework to explore large-scale biosynthetic diversity

JC Navarro-Muñoz, N Selem-Mojica… - Nature chemical …, 2020 - nature.com
Genome mining has become a key technology to exploit natural product diversity. Although
initially performed on a single-genome basis, the process is now being scaled up to mine …

Strategies for the discovery of new natural products by genome mining

M Zerikly, GL Challis - ChemBioChem, 2009 - Wiley Online Library
New drugs from silent gene clusters: Analysis of genome sequence data has identified
numerous “cryptic” gene clusters encoding novel natural product biosynthetic assembly …

Integrated metabolomic–genomic workflows accelerate microbial natural product discovery

NE Avalon, AE Murray, BJ Baker - Analytical chemistry, 2022 - ACS Publications
The pairing of analytical chemistry with genomic techniques represents a new wave in
natural product chemistry. With an increase in the availability of sequencing and assembly of …

Mining genomes to illuminate the specialized chemistry of life

MH Medema, T de Rond, BS Moore - Nature Reviews Genetics, 2021 - nature.com
All organisms produce specialized organic molecules, ranging from small volatile chemicals
to large gene-encoded peptides, that have evolved to provide them with diverse cellular and …

Identification of thiotetronic acid antibiotic biosynthetic pathways by target-directed genome mining

X Tang, J Li, N Millán-Aguiñaga, JJ Zhang… - ACS Chemical …, 2015 - ACS Publications
Recent genome sequencing efforts have led to the rapid accumulation of uncharacterized or
“orphaned” secondary metabolic biosynthesis gene clusters (BGCs) in public databases …