A genomic view of short tandem repeats

M Gymrek - Current opinion in genetics & development, 2017 - Elsevier
Short tandem repeats (STRs) are some of the fastest mutating loci in the genome. Tools for
accurately profiling STRs from high-throughput sequencing data have enabled genome …

[HTML][HTML] WebSTR: a population-wide database of short tandem repeat variation in humans

OS Lundström, MA Verbiest, F Xia, HZ Jam… - Journal of molecular …, 2023 - Elsevier
Short tandem repeats (STRs) are consecutive repetitions of one to six nucleotide motifs.
They are hypervariable due to the high prevalence of repeat unit insertions or deletions …

Characterization of genome-wide STR variation in 6487 human genomes

Y Shi, Y Niu, P Zhang, H Luo, S Liu, S Zhang… - Nature …, 2023 - nature.com
Short tandem repeats (STRs) are abundant and highly mutagenic in the human genome.
Many STR loci have been associated with a range of human genetic disorders. However …

STaRRRT: a table of short tandem repeats in regulatory regions of the human genome

KA Bolton, JP Ross, DM Grice, NA Bowden… - BMC genomics, 2013 - Springer
Abstract Background Tandem repeats (TRs) are unstable regions commonly found within
genomes that have consequences for evolution and disease. In humans, polymorphic TRs …

The landscape of human STR variation

T Willems, M Gymrek, G Highnam, D Mittelman… - Genome …, 2014 - genome.cshlp.org
Short tandem repeats are among the most polymorphic loci in the human genome. These
loci play a role in the etiology of a range of genetic diseases and have been frequently …

[PDF][PDF] Population-scale sequencing data enable precise estimates of Y-STR mutation rates

T Willems, M Gymrek, GD Poznik, C Tyler-Smith… - The American Journal of …, 2016 - cell.com
Short tandem repeats (STRs) are mutation-prone loci that span nearly 1% of the human
genome. Previous studies have estimated the mutation rates of highly polymorphic STRs by …

Accurate typing of short tandem repeats from genome-wide sequencing data and its applications

A Fungtammasan, G Ananda, SE Hile, MSW Su… - Genome …, 2015 - genome.cshlp.org
Short tandem repeats (STRs) are implicated in dozens of human genetic diseases and
contribute significantly to genome variation and instability. Yet profiling STRs from short-read …

Short tandem repeats in human exons: a target for disease mutations

BE Madsen, P Villesen, C Wiuf - BMC genomics, 2008 - Springer
Background In recent years it has been demonstrated that structural variations, such as
indels (insertions and deletions), are common throughout the genome, but the implications …

The mutational dynamics of short tandem repeats in large, multigenerational families

CJ Steely, WS Watkins, L Baird, LB Jorde - Genome Biology, 2022 - Springer
Abstract Background Short tandem repeats (STRs) compose approximately 3% of the
genome, and mutations at STR loci have been linked to dozens of human diseases …

[PDF][PDF] Profiling of short-tandem-repeat disease alleles in 12,632 human whole genomes

H Tang, EF Kirkness, C Lippert, WH Biggs… - The American Journal of …, 2017 - cell.com
Short tandem repeats (STRs) are hyper-mutable sequences in the human genome. They are
often used in forensics and population genetics and are also the underlying cause of many …