Expasy, the Swiss Bioinformatics Resource Portal, as designed by its users

S Duvaud, C Gabella, F Lisacek… - Nucleic acids …, 2021 - academic.oup.com
Abstract The SIB Swiss Institute of Bioinformatics (https://www. sib. swiss) creates, maintains
and disseminates a portfolio of reliable and state-of-the-art bioinformatics services and …

ExPASy: SIB bioinformatics resource portal

P Artimo, M Jonnalagedda, K Arnold… - Nucleic acids …, 2012 - academic.oup.com
Abstract ExPASy (http://www. expasy. org) has worldwide reputation as one of the main
bioinformatics resources for proteomics. It has now evolved, becoming an extensible and …

EDAM: an ontology of bioinformatics operations, types of data and identifiers, topics and formats

J Ison, M Kalaš, I Jonassen, D Bolser, M Uludag… - …, 2013 - academic.oup.com
Motivation: Advancing the search, publication and integration of bioinformatics tools and
resources demands consistent machine-understandable descriptions. A comprehensive …

Web services at the european bioinformatics institute-2009

H Mcwilliam, F Valentin, M Goujon, W Li… - Nucleic acids …, 2009 - academic.oup.com
Abstract The European Bioinformatics Institute (EMBL-EBI) has been providing access to
mainstream databases and tools in bioinformatics since 1997. In addition to the traditional …

Mobyle: a new full web bioinformatics framework

B Néron, H Ménager, C Maufrais, N Joly… - …, 2009 - academic.oup.com
Motivation: For the biologist, running bioinformatics analyses involves a time-consuming
management of data and tools. Users need support to organize their work, retrieve …

The European Bioinformatics Institute's data resources: towards systems biology

C Brooksbank, G Cameron, J Thornton - Nucleic acids research, 2005 - academic.oup.com
Genomic and post-genomic biological research has provided fine-grain insights into the
molecular processes of life, but also threatens to drown biomedical researchers in data …

The gene ontology annotation (GOA) project: implementation of GO in SWISS-PROT, TrEMBL, and InterPro

E Camon, M Magrane, D Barrell, D Binns… - Genome …, 2003 - genome.cshlp.org
Gene Ontology Annotation (GOA) is a project run by the European Bioinformatics Institute
(EBI) that aims to provide assignments of terms from the Gene Ontology (GO) resource to …

Omics Playground: a comprehensive self-service platform for visualization, analytics and exploration of Big Omics Data

M Akhmedov, A Martinelli, R Geiger… - NAR genomics and …, 2020 - academic.oup.com
As the cost of sequencing drops rapidly, the amount of 'omics data increases exponentially,
making data visualization and interpretation—'tertiary 'analysis a bottleneck. Specialized …

Tools and data services registry: a community effort to document bioinformatics resources

J Ison, K Rapacki, H Ménager, M Kalaš… - Nucleic acids …, 2016 - academic.oup.com
Life sciences are yielding huge data sets that underpin scientific discoveries fundamental to
improvement in human health, agriculture and the environment. In support of these …

[HTML][HTML] openBIS: a flexible framework for managing and analyzing complex data in biology research

A Bauch, I Adamczyk, P Buczek, FJ Elmer… - BMC …, 2011 - Springer
Background Modern data generation techniques used in distributed systems biology
research projects often create datasets of enormous size and diversity. We argue that in …