Hybrid-DIA: intelligent data acquisition integrates targeted and discovery proteomics to analyze phospho-signaling in single spheroids
A Martínez-Val, K Fort, C Koenig… - Nature …, 2023 - nature.com
Achieving sufficient coverage of regulatory phosphorylation sites by mass spectrometry (MS)-
based phosphoproteomics for signaling pathway reconstitution is challenging, especially …
based phosphoproteomics for signaling pathway reconstitution is challenging, especially …
Rapid and site-specific deep phosphoproteome profiling by data-independent acquisition without the need for spectral libraries
DB Bekker-Jensen, OM Bernhardt, A Hogrebe… - Nature …, 2020 - nature.com
Quantitative phosphoproteomics has transformed investigations of cell signaling, but it
remains challenging to scale the technology for high-throughput analyses. Here we report a …
remains challenging to scale the technology for high-throughput analyses. Here we report a …
A data-independent acquisition-based global phosphoproteomics system enables deep profiling
Phosphoproteomics can provide insights into cellular signaling dynamics. To achieve deep
and robust quantitative phosphoproteomics profiling for minute amounts of sample, we here …
and robust quantitative phosphoproteomics profiling for minute amounts of sample, we here …
Plug-and-play analysis of the human phosphoproteome by targeted high-resolution mass spectrometry
Systematic approaches to studying cellular signaling require phosphoproteomic techniques
that reproducibly measure the same phosphopeptides across multiple replicates, conditions …
that reproducibly measure the same phosphopeptides across multiple replicates, conditions …
Reduced-representation phosphosignatures measured by quantitative targeted MS capture cellular states and enable large-scale comparison of drug-induced …
Profiling post-translational modifications represents an alternative dimension to gene
expression data in characterizing cellular processes. Many cellular responses to drugs are …
expression data in characterizing cellular processes. Many cellular responses to drugs are …
Systematic optimization of automated phosphopeptide enrichment for high-sensitivity phosphoproteomics
Improving coverage, robustness, and sensitivity is crucial for routine phosphoproteomics
analysis by single-shot liquid chromatography-tandem mass spectrometry (LC-MS/MS) from …
analysis by single-shot liquid chromatography-tandem mass spectrometry (LC-MS/MS) from …
A streamlined tandem tip-based workflow for sensitive nanoscale phosphoproteomics
Effective phosphoproteome of nanoscale sample analysis remains a daunting task, primarily
due to significant sample loss associated with non-specific surface adsorption during …
due to significant sample loss associated with non-specific surface adsorption during …
Single-step enrichment by Ti4+-IMAC and label-free quantitation enables in-depth monitoring of phosphorylation dynamics with high reproducibility and temporal …
EL de Graaf, P Giansanti, AFM Altelaar… - Molecular & Cellular …, 2014 - ASBMB
Quantitative phosphoproteomics workflows traditionally involve additional sample labeling
and fractionation steps for accurate and in-depth analysis. Here we report a high-throughput …
and fractionation steps for accurate and in-depth analysis. Here we report a high-throughput …
High-throughput and high-sensitivity phosphoproteomics with the EasyPhos platform
Mass spectrometry has transformed the field of cell signaling by enabling global studies of
dynamic protein phosphorylation ('phosphoproteomics'). Recent developments are enabling …
dynamic protein phosphorylation ('phosphoproteomics'). Recent developments are enabling …
Exploration of cell state heterogeneity using single-cell proteomics through sensitivity-tailored data-independent acquisition
V Petrosius, P Aragon-Fernandez, N Üresin… - Nature …, 2023 - nature.com
Single-cell resolution analysis of complex biological tissues is fundamental to capture cell-
state heterogeneity and distinct cellular signaling patterns that remain obscured with …
state heterogeneity and distinct cellular signaling patterns that remain obscured with …